Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5e18
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 29 0.37
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 2.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 2.6
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 3.5
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 3.5
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 3.5
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 4.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 8.1
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 25 8.1
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 8.1
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 29.5 bits (63), Expect = 0.37
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 392 YSSHLSQYTTHCYLHISHPAD 454
Y S YTTHC +H++ P D
Sbjct: 99 YCESKSMYTTHCVIHVAVPQD 119
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 174 NCCSPCEQIG*ELGKIVEHLE 112
NCC +Q+G E KI+E+++
Sbjct: 213 NCCEAIQQLGEEKQKIIEYVQ 233
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 381 GXSVVDCIKKI*RESQLAVIQSGPRLRIQLFRRVIFVEALAG 256
G + DC ++ RESQ SGP L + F+RVI + G
Sbjct: 99 GIKIQDCSERSLRESQ-----SGPLLLVDPFQRVICLHVYQG 135
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 505 YPIHPRFLKISSELLQFVRRMRDMQVAM 422
+P P L + SEL+QF RR +Q M
Sbjct: 460 FPSSPSSLPLLSELIQFSRRPSPVQTGM 487
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.2 bits (55), Expect = 3.5
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 346 LNLFNTINDAXPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTA 525
L LF +N+A PDD+I P +Y+ + L LR L+ DG +I L
Sbjct: 64 LTLFAPLNEAFPDDSI--EPNLLYYIVNTTELD-----RSVLRTQLKSSDG-QQIALKIH 115
Query: 526 YKVDK-RARGINNNS 567
YK + RA NN+
Sbjct: 116 YKAETGRAYDKVNNA 130
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 533 TLYAVIKFILSNPSSISKDFLRASSVCP 450
+L++ ++ IL +P+S LRA +CP
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCP 571
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 503 SNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEK 396
SN S+ K+ +A + PP ++ ++E EKGE+
Sbjct: 296 SNDSASRKEKPKARASTPPPLNFSRASEHRNEKGER 331
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 554 IPRARLSTLYAVIKFILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNM 390
IPR + AV+ N ++ F+ SS CPP + + + +E G+ M
Sbjct: 173 IPRGSETNRLAVVNMDWDNLQAVDL-FVALSSFCPPGGKLLKVSIYPSEFGKSRM 226
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 464 SSVCPPDERYASSNEWYTEKGEKNMLSSGXASLIV 360
+S CP A+SN+ YT KG++ G + +V
Sbjct: 2 ASCCPTSRGAAASNKSYTFKGKEIENFGGLTTYVV 36
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 572 LSLLLFIPRARLSTLYAVIKFILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKN 393
L +LL++P + ++ K + PSS+S LR + P ++ EKG K
Sbjct: 752 LRILLYLPHSDMAITLQFFKQLSMVPSSLS--LLRKVHIIPLLTHILGDSK--IEKGRKE 807
Query: 392 MLSSGXASL 366
+ S A+L
Sbjct: 808 IRSEALAAL 816
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,165
Number of Sequences: 5004
Number of extensions: 43754
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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