Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e18
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647...    29   2.7  
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322...    28   4.7  
12_01_0548 + 4394182-4394313,4394395-4394517                           28   6.2  
02_04_0146 - 20188984-20189379,20189874-20190067,20190153-201905...    28   6.2  
04_03_0942 - 20958687-20959082,20959306-20959499,20959582-209599...    27   8.2  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    27   8.2  

>06_03_1228 -
           28563546-28563630,28563897-28564000,28564256-28564759,
           28564854-28564932,28566053-28566130,28566227-28566268,
           28566352-28566449,28566542-28566673,28566757-28566879
          Length = 414

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 193 DIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSSKKL 297
           D + TT +R L  V+ VVS  T  CF  DDS+ K+
Sbjct: 79  DGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKI 113


>03_06_0124 -
           31830797-31831371,31831510-31831532,31832143-31832271,
           31833287-31834842
          Length = 760

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 424 LLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKV 534
           L+  Y++ G  T    RKS++ E+GL  ++ +T  K+
Sbjct: 461 LVYKYMAKGDLTSALHRKSVDAEEGLRSLDWITRLKI 497


>12_01_0548 + 4394182-4394313,4394395-4394517
          Length = 84

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 58  FKANRIIIHNKIILYSITFQVFDDFT*FSTNLLARRTTVTCTPLEDI 198
           FKA R ++HN      I  +V ++F  +S + +A+ T    + + D+
Sbjct: 10  FKAERYVLHNPKSFNDIFIRVLEEFVCWSYSFIAQVTRKGSSVISDL 56


>02_04_0146 -
           20188984-20189379,20189874-20190067,20190153-20190547,
           20191467-20191549
          Length = 355

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 122 STILPNSQPICSQGEQQLPAH 184
           +TILP+++P C++   Q+P H
Sbjct: 110 ATILPSARPWCAEARYQIPDH 130


>04_03_0942 -
           20958687-20959082,20959306-20959499,20959582-20959976,
           20961168-20961532
          Length = 449

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 122 STILPNSQPICSQGEQQLPAH 184
           +TILP+++P C+    Q+P H
Sbjct: 204 ATILPSARPWCAAARYQIPGH 224


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 388 NIFFSPFSVYHSLLLAYLSSGGQTEEALRKSL 483
           N+ FSP S++ +L L    +GG T + L  +L
Sbjct: 36  NVAFSPLSLHVALSLVAAGAGGATRDQLASAL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,518
Number of Sequences: 37544
Number of extensions: 259638
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)