Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e18
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   1.7  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   5.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.9  

>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 68  TVSLFIIK*YYIL*PSKCSTILPNSQPICSQGEQQLP 178
           TV LF      ++ PSKC  +  + QP+ ++    +P
Sbjct: 13  TVLLFSFVVILLIIPSKCEAVSNDMQPLEARSADLVP 49


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 466 ALRKSLEIEDGLDKINLMTAYKVDKRARG 552
           A +++    D +DK NL     + KRA G
Sbjct: 111 ATKQACGFIDNIDKRNLSVTSMIQKRALG 139


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 316 ALYNGQLGFTLNLFNTINDAXPDDNI 393
           AL NG+   T+  +N I    P+DNI
Sbjct: 11  ALANGEEIKTIYSWNVIEYNFPNDNI 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,653
Number of Sequences: 438
Number of extensions: 2981
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)