Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5e17
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate dehydr... 227 7e-60
AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical ... 34 0.073
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 31 0.51
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 28 4.8
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 28 4.8
>AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate
dehydrogenase protein 1 protein.
Length = 341
Score = 227 bits (554), Expect = 7e-60
Identities = 110/143 (76%), Positives = 127/143 (88%)
Frame = +3
Query: 195 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDAD 374
IGQPL LLLKQ+PLV LALYD+ TPGVAADLSH+++ AKV+ H GP+EL AA+++AD
Sbjct: 40 IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENAD 98
Query: 375 VVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEV 554
V+VIPAGVPRKPGMTRDDLFNTNA IVRD+A IA+ +PKA++AIITNPVNSTVPIASEV
Sbjct: 99 VIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPIASEV 158
Query: 555 LKKAGVYDPNRVLGVTTLDVVRA 623
LKKAGVYDP RV GVTTLDVVR+
Sbjct: 159 LKKAGVYDPKRVFGVTTLDVVRS 181
>AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical
protein ZK6.8 protein.
Length = 488
Score = 34.3 bits (75), Expect = 0.073
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 124 FCTARAAGFRARENIFVVC-LTCIYVYI*TIST*PSRP 14
FC+ R F R +F+ C LTC+Y + IST P+ P
Sbjct: 320 FCSKRIKNFGMRPTMFIGCFLTCLYCALVVISTPPTAP 357
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 225 QNPLVT-RLALYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPA 392
Q+PL + +YD + + G + S++N + + G G L AIKDAD V+IP+
Sbjct: 980 QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039
Query: 393 GV 398
V
Sbjct: 1040 HV 1041
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 225 QNPLVT-RLALYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPA 392
Q+PL + +YD + + G + S++N + + G G L AIKDAD V+IP+
Sbjct: 980 QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039
Query: 393 GV 398
V
Sbjct: 1040 HV 1041
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 345 PQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 208
P V C +GCSC KG LR R Q + P P ++ E P
Sbjct: 187 PLVNCMEKCDIGCSCKKGFLRNRQGQC---VNPTECPATGSTDENP 229
>Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical
protein ZK1067.4 protein.
Length = 541
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 162 SSSVMWWKSSLHHFVQQGRQV 100
S ++WWKS +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 348 APQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 208
APQV C +GCSC G + R +Q +C +K A P ++ E P
Sbjct: 122 APQVNCLMACQVGCSCMDGFV--RNNQGVC-VKEAECPAIGSTDENP 165
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/59 (20%), Positives = 33/59 (55%)
Frame = +3
Query: 432 FNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTL 608
FN+ S++ + +++A N+P A + ++ +++ + +A+ K++ DP + + L
Sbjct: 129 FNSKLSLITESTIAVAANSPDA--STVSKIIDNRLIVAASATKESPYRDPFPAVAIRNL 185
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/59 (20%), Positives = 33/59 (55%)
Frame = +3
Query: 432 FNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTL 608
FN+ S++ + +++A N+P A + ++ +++ + +A+ K++ DP + + L
Sbjct: 129 FNSKLSLITESTIAVAANSPDA--STVSKIIDNRLIVAASATKESPYRDPFPAVAIRNL 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,240
Number of Sequences: 27780
Number of extensions: 354569
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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