Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e15
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|...    29   0.44 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.1  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   4.1  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   4.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.1  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    25   7.2  
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.5  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   9.5  

>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
           Isd11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 118 LYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCGQAEELIIQAEN 297
           LY  IL+T +  P T  YR+YT +  R++   L    D  + E+ I   +    IIQ ++
Sbjct: 11  LYRNILKTSKLFPYT--YREYTIRRTRDKFKELKVESDPAKFEQGIKDSEKLLEIIQRQS 68

Query: 298 ELN 306
            +N
Sbjct: 69  IIN 71


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = +1

Query: 97  PHHTLGALYGKILRTLQKMPETSVYRKY-----TEQIVRERAAVLTQTKDSFEIEKKINC 261
           P + +  LY   L     +   S +  Y       +++  +  VL+        +K+  C
Sbjct: 357 PKNNIAKLYDPRLHLFFSLRHNSFFESYFIYFFLAKLILLKKTVLSLASTEQANKKQKTC 416

Query: 262 GQAEELIIQAE 294
            Q EEL++QAE
Sbjct: 417 SQIEELLLQAE 427


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 103 HTLGALYGKILRTLQKMPETSV 168
           HT  A Y  I++TLQ +P T V
Sbjct: 276 HTNAATYRVIIQTLQNLPHTKV 297


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 169 YRKYTEQIVRERAAVLTQTKDSFEIEKKINCGQAEELIIQAENEL 303
           Y ++ ++IV+ER      +K   +   K+N G A  L  Q EN+L
Sbjct: 433 YEEHRQKIVKERLEKQRASKIRSQNRPKVNAGLASRLSYQ-ENKL 476


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 535 VCNKHGLEIILCIWQPLILL 594
           +CN   L   LCIWQP ILL
Sbjct: 693 LCNITFLGSHLCIWQPKILL 712


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 594 IERLSNLSCCC 626
           I+RL+NL CCC
Sbjct: 186 IDRLANLGCCC 196


>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 63  NRSNRIGSRRKSASHFGRPIW 125
           NRSN    R+K+  H   P+W
Sbjct: 113 NRSNLKRKRKKTVQHNAHPLW 133


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 456 KLLKAVFYRRMFLSVLEIFKISHY 527
           KLL AVF ++ FL V  +  I+H+
Sbjct: 287 KLLSAVFSKKSFLIVSVLLLIAHF 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,767
Number of Sequences: 5004
Number of extensions: 43057
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)