Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e14
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    24   9.4  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    24   9.4  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    24   9.4  

>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = -2

Query: 418 YLYGLCDCLXSSNDMAFVIFSSYAEHEGTSQEXTHSSKLAY 296
           +++G+ +C+    +  F++F S A+  G   +    + LA+
Sbjct: 55  FIFGM-ECIVYEKNKEFIVFVSKADSTGFGSKGVSCNSLAF 94


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 269 RTPLIIE*YFLHLNTTEFFLYNII 198
           R PL+IE  F+  N+TE   Y I+
Sbjct: 520 RVPLLIEVTFIDSNSTEGLPYQIL 543


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 87  DVAALPYIPTRAVNFIDGSIF 149
           DV+A  YIPT  ++  DG IF
Sbjct: 361 DVSA--YIPTNVISITDGQIF 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,632
Number of Sequences: 5004
Number of extensions: 26989
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)