Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e04
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.2  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.2  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 337 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 203
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 533 IYSYNSXRNTLYFNTXYSNYXN 598
           I + NS  N   +N  Y+NY N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNN 103


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 521 YXSHIYSYNSXRNTLYFNTXY 583
           Y ++  +YN+    LY+N  Y
Sbjct: 94  YNNYNNNYNNYNKKLYYNINY 114


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 536 YSYNSXRNTLYFNTXY 583
           Y+YN+    LY+N  Y
Sbjct: 98  YNYNNNCKKLYYNINY 113


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 512 N*KYXSHIYSYNSXRNTLYFNTXY 583
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 512 N*KYXSHIYSYNSXRNTLYFNTXY 583
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 512 N*KYXSHIYSYNSXRNTLYFNTXY 583
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 512 N*KYXSHIYSYNSXRNTLYFNTXY 583
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,506
Number of Sequences: 438
Number of extensions: 1752
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)