Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e02
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.69 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.8  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 SATGLTYPSITFPPSPTDDLTI*LNCFSLNTS 55
           SA G TY + +   +PT  ++  +NC+SL +S
Sbjct: 298 SAPGPTYSTWSTVQTPTTVMSPTINCWSLTSS 329


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = -3

Query: 458 RRYPGGAENDSPGC--PSRAGPA 396
           RRY G A  D P C    R GPA
Sbjct: 283 RRYTGRATCDCPNCQEAERLGPA 305



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 402 SCPTWTSRAIVLGTTWIPSTYHTRQSPLRPSLVSTQPS 515
           S PT++SR+++   + +P+T         P   S  P+
Sbjct: 92  SNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQPPT 129


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -2

Query: 240  FTNKCKHVTCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPT 100
            F+N+C   + PL  +    L   P NP+    T    P    PP  T
Sbjct: 972  FSNRCCGGSFPLLRSLNRGLGLIPDNPSREDCTKPPEPVTPAPPQVT 1018


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 119 VIDGYVKPVADGIAGFLGDHFKVT 190
           +++G  + + DGI   + D  KVT
Sbjct: 195 ILEGRFRVINDGIQALINDSRKVT 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,138
Number of Sequences: 336
Number of extensions: 2782
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)