Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e02
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46305| Best HMM Match : SSDP (HMM E-Value=2)                        33   0.25 
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9)                28   5.4  
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         28   7.1  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            28   7.1  
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)                 27   9.4  
SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)                  27   9.4  

>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
          Length = 848

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +2

Query: 401 VLPDLDIQGYRSRHHLDTFDLPHATVTITSIARFH--ATFANYETKNILNGRS---EYNF 565
           VL +L    YR   HL     PH           +    FA  +T+N L+GRS   +YNF
Sbjct: 99  VLINLGKMSYRDVWHLLKMAYPHVERVRRGRMYMYWGIQFAGAQTENTLSGRSSDEDYNF 158

Query: 566 YKQHEHLLKR 595
           Y+  E+  KR
Sbjct: 159 YESQENGYKR 168


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 366 TSKHTYTPTACWSCPT-WTSRAIVLGTT-WIPSTYHTRQSPLRPS 494
           TS  +YTPT  ++C T +TS      TT + P+T +T  +   P+
Sbjct: 45  TSTTSYTPTPSYTCTTSYTSTTSYTSTTSYTPTTSYTPTTSYTPT 89


>SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
          Length = 442

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 359 PWNVKAYLYSDSM-LVLPDLDIQGYRSRHHLDTFDLPHATVTITSIARFHATFANYETK 532
           P++++ Y Y   M  +LP  DI+GY  R+ + +   P+ T   +     H+    Y+T+
Sbjct: 133 PYDIRGYSYRYPMHSLLPPYDIRGYSYRYPMHSPLPPYDTRGYSYRYPMHSPLPPYDTR 191


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 362 WNVKAYLYSDSMLVLPDLDIQGYRSRHHLDTFDLPHATV---TITSIARFHATFANYETK 532
           WN+      +S+ +   L ++   S  H  T ++P+A V   T+T + R+     + +  
Sbjct: 647 WNIPPEDTWNSLFIGYILSLEPENSPQHTSTLNIPNARVDHYTVTGLMRYTRYTISIKAY 706

Query: 533 NILNGRSEYNFYK 571
           N LNG+   N  K
Sbjct: 707 N-LNGKGTSNVTK 718


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 234 NKCKHVTCPLTCTSKVTLK*S-PRNPAMPSATGLTYPSITFPPSPTDDLT 88
           N+    T P T T   T   + P N   P+ T  T P+ T PP+ T   T
Sbjct: 42  NRTTTPTTPTTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTPTT 91


>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
          Length = 592

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 318 LNFLKNLRTSEIRIHGTSKHTYTPTACWSCPTWTSRAIVLGTTWIPSTYHTRQSPLRPSL 497
           L+ + N+ T+  RI     HTYTPT     PT  +    + T  I  T  T Q+P   S 
Sbjct: 535 LDKINNMETTHHRILDLLSHTYTPT-----PTPQTITAAVQTIPIIKTSATTQTPPISST 589

Query: 498 VST 506
             T
Sbjct: 590 TDT 592


>SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)
          Length = 476

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 413 LDIQGYRSRHHLDTFDLPHATVTITSIARFHATFANYETKNILNGRSEYNFYKQH 577
           L+++      +L T D    T  +T +AR H T      + +  G +E   + QH
Sbjct: 353 LNVRSLPGEEYLATLD-DEDTACVTCLARSHVTREGATLQRLCTGGAELKLWSQH 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,293,948
Number of Sequences: 59808
Number of extensions: 365668
Number of successful extensions: 819
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)