Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e01
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.6  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   2.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   2.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   6.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 327 PTDENKKTQGLFSGFGAFNKAPSS 398
           P DE+K   G+ SG    + +PSS
Sbjct: 47  PMDEDKNDSGVTSGSDFHSSSPSS 70


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 293 CY*NSKKTNDGPY 331
           CY NSK T DG Y
Sbjct: 275 CYYNSKMTKDGVY 287


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 198 DLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIK 302
           D   + W++ + + +K+ G ++   KD++EK  IK
Sbjct: 95  DNKRDWWNELEAKYDKD-GVYRQKYKDVIEKEGIK 128


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 245 GDGNF*SCTQGYTGKACY*N 304
           G G+   C  G+TGK C+ N
Sbjct: 49  GVGHRCQCQPGFTGKYCHEN 68


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 291 RVIKTAKRRTTAPTDENKKTQGLFSG 368
           R +K    +  APT E K+ +  FSG
Sbjct: 212 RRVKKPGAKQGAPTAEEKRPRTAFSG 237


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 266 CTQGYTGKAC 295
           C  GYTGK C
Sbjct: 87  CPYGYTGKDC 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,507
Number of Sequences: 336
Number of extensions: 2451
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)