Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e01
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    29   0.75 
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    28   0.99 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.3  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    27   1.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.7  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    27   2.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    27   2.3  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    27   3.0  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   5.3  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   7.0  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   9.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   9.2  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.2  

>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +3

Query: 195 TDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDENKKTQGLFSGFG 374
           ++++ EN  Q   E NKE G F +   D + K +  +  + T A +++   T+   S   
Sbjct: 66  SNMHLENQFQHFHEPNKESGAFGSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNY 125

Query: 375 AFNKAPSS 398
           A +++  S
Sbjct: 126 AHHRSADS 133


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 366 GFGAFNKAPSSFDFLANLTKDSKSNA 443
           GF +  KAP  + F+A L+K++ SN+
Sbjct: 30  GFTSIYKAPPPYSFVAGLSKNTSSNS 55


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 318 TTAPTDENKKTQGLFSGFGAFN-KAPSSFDFLANLTKDSKSNATTTS 455
           T   T     + GLF    A N  APS+F F    T  + +NA+T+S
Sbjct: 40  TNNNTSSTAPSGGLFGSNNASNTSAPSTFSFGKAATTGNSTNASTSS 86


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 372 GAFNKAPSSFDFLANLTKDSKSNATTTSAESGSAGLF 482
           G F+++PS   F ++ T+DS   + ++S  S  A LF
Sbjct: 113 GIFDQSPSQIPFPSSNTEDSSEESDSSSRASRLAKLF 149


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 438 NATTTSAESGSAGLFSNKXXXXXXXXXXXXXAPINTPLGTST 563
           N+T TS+ SGS G F+N               P +TPL  ST
Sbjct: 573 NSTITSSASGSTGEFTN-TNSGNGDVSGSVTTPTSTPLSNST 613


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 378 FNKAPSSFDFLANLTKDSKSNATTT 452
           F K PSSF+F+ N T+ S +    T
Sbjct: 16  FGKRPSSFEFIVNKTRFSSAPVVAT 40


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 198 DLNHENWDQEDPEENKEMGTFKAAPKDIL 284
           D +HEN D  +  EN E    KAA K +L
Sbjct: 53  DNDHENLDSNNNNENNEAFNEKAAEKKLL 81


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 159 SPVIMSVKRQATTDLNH------ENWDQEDPEENKEMGTFKAAPKDILE 287
           SP+   VKR  TTD  +      EN +++D EE   +   K +  D+L+
Sbjct: 131 SPIPQQVKRDGTTDAKNEETTKPENNEKDDFEEEPPLPKHKISVPDVLK 179


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 529 LHQLTHP*EHQHLKHLLY 582
           LH++THP + QH + ++Y
Sbjct: 101 LHRITHPKQSQHKREVVY 118


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 153 LLSPVIMSVKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEK 290
           LLSP + S    ++     +  D+ED E  K+    + +P  +L +
Sbjct: 515 LLSPRLYSSSTPSSPTKGFQKDDEEDSENRKQADKVELSPSSLLRQ 560


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 222 QEDPEENKEMGTFKAAPKDILEKRVIKTAKR 314
           +ED EE KE+GT  A   D   KR +K  ++
Sbjct: 109 REDQEETKEVGT--AEMVDRFAKRTVKVTRQ 137


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 177  VKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAK 311
            +K+QA   LN     +E+P  +    T + + K I+++ +I  AK
Sbjct: 1372 IKKQAMARLNSFLQKKEEPTVSSSAKTNELSSKVIIKESIINEAK 1416


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 360 FSGFGAFNKA-PSSFDFLANLTKDSKSNATTTSAESGS 470
           FSG  +F+ + PSS     +   DS S+A   + E+GS
Sbjct: 512 FSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGS 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,888
Number of Sequences: 5004
Number of extensions: 41950
Number of successful extensions: 111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)