Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e01
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0628 - 16367841-16369259                                         43   2e-04
11_06_0710 - 26492093-26493460                                         29   2.4  
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...    29   2.4  
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    28   5.4  
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197...    28   7.2  

>05_03_0628 - 16367841-16369259
          Length = 472

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = +3

Query: 174 SVKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDIL-EKRVIKTAKRR-TTAPTDENKK 347
           S KR A T +N +N + +D    +EMGTFK A ++++  +R++K  +++ ++AP++    
Sbjct: 10  SRKRVAGTQINKDNPEPDDDSTEQEMGTFKRASEEVMATRRIVKVRRQQPSSAPSNPFSA 69

Query: 348 TQGLFSGFGAFNKAPSSFDFLANLTKDSKSNATTTSAESGSAG 476
            +   S   A    P S    +++   +  ++++  A+ GS G
Sbjct: 70  IRFTPSDTSAQATIPVSEPQPSDVITANAKDSSSEKADEGSNG 112


>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 180 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDEN 341
           K+++ +     + D+ED +++K  G   A PK+  E+    +A   T+AP +E+
Sbjct: 228 KKKSKSKSKSSSSDEEDEKKSKSEGQAAAKPKEEDEEGGSASASASTSAPKNEH 281


>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 201 LNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDENKKTQ 353
           L +EN +QED  +          P+ IL K  +  A  + TA T + KK +
Sbjct: 248 LGYENVEQEDDSDASSSEDEAQNPQIILSKEDVYKANHKGTAATKKKKKAK 298


>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
            25979135-25979254,25979357-25979532,25979624-25980107,
            25980541-25980744,25981671-25981877,25982179-25982271,
            25982433-25982621,25983364-25983423,25983591-25983927,
            25984195-25984432,25984614-25984816,25985549-25986554,
            25987125-25987290,25987715-25987824,25987944-25988195,
            25988360-25988402,25988488-25988550,25989512-25989624,
            25990787-25990838
          Length = 1824

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 225  EDPEENK-EMGTFKAAPKDILEKRVIKTAKRRTTAP-TDENKKTQG 356
            EDPE ++ ++ + ++ P DI+    IKT+ +R  A  + E  +T+G
Sbjct: 1405 EDPETSEMDVNSIRSHPPDIVSNAQIKTSNKRLVAKVSSEAFETEG 1450


>11_04_0166 + 14317129-14317962,14318042-14318809,14319008-14319740,
            14353399-14353892,14353971-14354417,14354505-14355110,
            14355204-14355391,14355470-14355640,14355723-14355810
          Length = 1442

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 252  GTFKAAPKDILEKRVIKTAKRRTTAPTDE-NKKTQGLFSGFGAFNKAPSSFDFLANLTKD 428
            GTF   PKD++E RV  TA R TTAP+    K+     S   A ++   S+D    L  D
Sbjct: 1167 GTFIQWPKDLIEIRV--TA-RPTTAPSGRPPKRPASAPSALPAQDRHAQSYD--VQLQYD 1221

Query: 429  SKSNATTTSAES 464
            +      T A+S
Sbjct: 1222 TDFGEDRTEADS 1233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,647,593
Number of Sequences: 37544
Number of extensions: 238819
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)