Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5e01
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77660-3|CAB01171.1|  471|Caenorhabditis elegans Hypothetical pr...    35   0.056
Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical...    31   0.92 
Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    30   1.6  
AF016674-4|AAB66130.1|  287|Caenorhabditis elegans Hypothetical ...    29   3.7  

>Z77660-3|CAB01171.1|  471|Caenorhabditis elegans Hypothetical
           protein F38H4.3 protein.
          Length = 471

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 165 VIMSVKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKR-RTTAPTDEN 341
           VI + KR    D+      Q+ P++  E         DIL + V+KT +  RT A  DEN
Sbjct: 106 VISAAKRSVDDDVEKPQTSQKPPQKPSEPDAESINMNDILMENVLKTTEEDRTEAEIDEN 165

Query: 342 KKTQGL 359
           +  + L
Sbjct: 166 ELKKAL 171


>Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical
           protein ZK643.2 protein.
          Length = 197

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 216 WDQEDPEENKEMGTFKAAPKDILEKR 293
           WD+EDPE+NK +    A    I+ KR
Sbjct: 102 WDKEDPEDNKHLYVVHAEMNAIINKR 127


>AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical
           protein Y39A1A.23 protein.
          Length = 497

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +3

Query: 186 QATTDLNHENWDQEDPEEN---KEMGTFKAAPKDILEKRVIKTAKRRTTAPTDENKKTQG 356
           QA  D++ E    E PEEN    E+   +   ++  E   I   KRR TA  D N+K + 
Sbjct: 405 QAMQDVSIETIPVETPEENIIPVEVEMLEEPEQEDQEIFKIPQPKRRKTAEDDRNRKIRR 464

Query: 357 LFSGFGAFNKAPSSFDF 407
           +  G    +K   S  F
Sbjct: 465 ILMGTETTSKMRMSQQF 481


>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 180 KRQATTDLNHENWDQEDPEENKEMGTFKAAP-KDILEKRVIKTAKRRTTAPTDENKK 347
           K+Q T+D + ++ D +D + +K+    K  P  ++L+K V K A   ++  +D+ KK
Sbjct: 175 KKQDTSDSDSDSEDSDDGK-SKKANPVKVTPVANVLQKVVAKKAASSSSDSSDDEKK 230


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 180 KRQATTDLNHENWDQEDPEENKEMGTFKAAP-KDILEKRVIKTAKRRTTAPTDENKK 347
           K+Q T+D + ++ D +D + +K+    K  P  ++L+K V K A   ++  +D+ KK
Sbjct: 175 KKQDTSDSDSDSEDSDDGK-SKKANPVKVTPVANVLQKVVAKKAASSSSDSSDDEKK 230


>AF016674-4|AAB66130.1|  287|Caenorhabditis elegans Hypothetical
           protein C03H5.3 protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 162 PVIMSVKRQATTDLNHENWDQEDPEE----NKEMGTFKAAPKDILEKRVIKTAKRRTTAP 329
           P+ +S K   T+  N EN D +D E     +K      A PK I+EK + K A++     
Sbjct: 147 PMEISSKNPVTSIENPENSDSDDDEPMEATSKAPEMSVAEPKSIIEKLLEKKAEKSAKLA 206

Query: 330 TDENKK 347
             + KK
Sbjct: 207 AKKLKK 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,791
Number of Sequences: 27780
Number of extensions: 232936
Number of successful extensions: 581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)