Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5d21
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 192 1e-49
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 46 3e-05
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 42 5e-04
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 42 5e-04
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 38 0.006
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 37 0.011
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 36 0.033
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.076
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 33 0.13
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 33 0.17
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 33 0.23
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 33 0.23
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 32 0.30
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 31 0.70
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.2
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 30 1.2
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 30 1.2
U23176-7|AAC46713.4| 454|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 30 1.6
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 2.1
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 29 2.1
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 2.8
Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF101319-4|AAC69352.1| 463|Caenorhabditis elegans Hypothetical ... 29 3.8
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical... 28 5.0
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 28 5.0
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 27 8.7
Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical pr... 27 8.7
X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein. 27 8.7
AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeri... 27 8.7
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 27 8.7
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 27 8.7
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 192 bits (469), Expect = 1e-49
Identities = 81/127 (63%), Positives = 101/127 (79%)
Frame = +1
Query: 223 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 402
PITCHAWNKDR+QIA S ++N++HI++ DW+ + L EHDL V G+DW TNRIV+
Sbjct: 16 PITCHAWNKDRTQIAVSASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVS 75
Query: 403 CSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKE 582
CS D+NA+VWT D W LVL+R NRAAT VKWSP+ENKFAVGSGA+L+S+CY+EKE
Sbjct: 76 CSQDKNAFVWT-FDKNVWKPELVLVRFNRAATYVKWSPLENKFAVGSGAKLVSVCYYEKE 134
Query: 583 NNWWVSK 603
N+WWVSK
Sbjct: 135 NDWWVSK 141
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Frame = +1
Query: 202 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP 381
T + P+T W ++I + ++ + N WK LV + + W+P
Sbjct: 53 TLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWTFDKNVWKPELVLVRFNRAATYVKWSP 112
Query: 382 NTNRIVTCSVDRNAYV-WTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGS 543
N+ S + V + + ++ W + + I TC+ W AVGS
Sbjct: 113 LENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWHSNNVLLAVGS 167
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 602 KHIKKPIRSTVTSID 646
K IKKPIRSTVT +D
Sbjct: 141 KQIKKPIRSTVTCLD 155
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/122 (22%), Positives = 57/122 (46%)
Frame = +1
Query: 238 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 417
A++ D + + + V +Y++E ++ + N L H+ V ++ + + TCS D+
Sbjct: 74 AFSNDGKCLVSASFDASVVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDK 133
Query: 418 NAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWV 597
+ + W Q +D ++ + +L + V W P E+ S I F+ E+ WV
Sbjct: 134 SVWFWQQDEDEDFSVSSILQPHTQDVKQVAWHPTEDLLVSCSYDSSIRFYRFDGED--WV 191
Query: 598 SK 603
++
Sbjct: 192 TQ 193
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/105 (22%), Positives = 45/105 (42%)
Frame = +1
Query: 229 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 408
+C A + D+ +A +++VH+YK G + +V H + + ++ N +V
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510
Query: 409 VDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGS 543
R ++ ++ + A T CV WSP + A GS
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 220 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWAPNTNRI 396
A IT A++ + + + + + +V Y N + TN+ H +V + W+P+ R+
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 397 VTCSVDRNAYVW 432
T S+D + VW
Sbjct: 552 ATGSLDNSVIVW 563
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +1
Query: 202 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYK-----KEGNDWKQTNNLVEHDLRVMG 366
TFG+ + +N D S A + + + +Y K G + V H V G
Sbjct: 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244
Query: 367 IDWAPNTNRIVTCSVDRNAYVW 432
+ W+P+ +I + S D+ +W
Sbjct: 245 LTWSPDGTKIASASADKTIKIW 266
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/105 (22%), Positives = 45/105 (42%)
Frame = +1
Query: 229 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 408
+C A + D+ +A +++VH+YK G + +V H + + ++ N +V
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510
Query: 409 VDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGS 543
R ++ ++ + A T CV WSP + A GS
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 220 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWAPNTNRI 396
A IT A++ + + + + + +V Y N + TN+ H +V + W+P+ R+
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 397 VTCSVDRNAYVW 432
T S+D + VW
Sbjct: 552 ATGSLDNSVIVW 563
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +1
Query: 202 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYK-----KEGNDWKQTNNLVEHDLRVMG 366
TFG+ + +N D S A + + + +Y K G + V H V G
Sbjct: 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244
Query: 367 IDWAPNTNRIVTCSVDRNAYVW 432
+ W+P+ +I + S D+ +W
Sbjct: 245 LTWSPDGTKIASASADKTIKIW 266
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/105 (20%), Positives = 42/105 (40%)
Frame = +1
Query: 229 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 408
TC A+ ++S +A + +VH+YK G+ + +EH + + ++ + +
Sbjct: 440 TCVAFCAEKSLVAVGGKDAKVHVYKLNGDGRLEELKKIEHSAEITAVSFSDDGEYLAVTD 499
Query: 409 VDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGS 543
+ R ++ D + V WSP + A GS
Sbjct: 500 LARKVIPYSVSTDFSVTSPNSWTFHTSKVLTVAWSPDNQRLATGS 544
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 220 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNTNR 393
A IT +++ D +A + +V Y D+ T N+ H +V+ + W+P+ R
Sbjct: 481 AEITAVSFSDDGEYLAVTDLARKVIPYSVS-TDFSVTSPNSWTFHTSKVLTVAWSPDNQR 539
Query: 394 IVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 510
+ T S+D + +W G+ + + V+W
Sbjct: 540 LATGSIDTSVIIWDMKKPGEHPVIIKGAHPMSSVNVVRW 578
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 241 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL-----VEHDLRVMGIDWAPNTNRIVTC 405
+N D S A + ++ V +Y G D ++ L V H + + W+P+ +RI T
Sbjct: 198 YNNDGSLFASTGSDGTVVLYN--GVDGEKVGVLEDAKGVAHTGSIFALAWSPDQSRIATA 255
Query: 406 SVDRNAYVW 432
S D++ +W
Sbjct: 256 SADKSVKIW 264
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 313 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 438
++W + + ++ H L V I W P+ R++T S DR A ++T+
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTE 637
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 298 YKKEGNDWKQTN-NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 474
+K +D + N NL H + + W + +++ +C YVW + DD +W+ LV
Sbjct: 51 FKPTPDDLTRYNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWVRNDD-RWSVELVN 109
Query: 475 LRINRAATCVKWSP 516
R + + + WSP
Sbjct: 110 DRGVKVSD-LSWSP 122
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +1
Query: 313 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC----SVDRNAYVWTQGDDGKWATTL 468
+ +KQ V+ D V G++WAP ++ + D+NA V+ + + GKW+ T+
Sbjct: 51 SSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQNANVYKKEEHGKWSITV 106
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +1
Query: 349 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENK 528
D + G+ +AP + T S D A VW D ++ VL C+ W P +
Sbjct: 217 DEAIRGLAFAPTDVKFATASDDGTARVW---DFARYTEERVLRGHGAEVRCIDWHPTKGL 273
Query: 529 FAVGS 543
A GS
Sbjct: 274 IATGS 278
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +1
Query: 202 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYK-----KEGNDWKQTNNLVEHDLRVMG 366
TFG+ + +N D S A + + + +Y K G + V H V G
Sbjct: 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244
Query: 367 IDWAPNTNRIVTCSVDRNAYVW 432
+ W+P+ +I + S D+ +W
Sbjct: 245 LTWSPDGTKIASASADKTIKIW 266
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +1
Query: 229 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 408
+C A + D+ +A +++VH+YK G + +V H + + ++ N +V
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510
Query: 409 VDR 417
R
Sbjct: 511 QSR 513
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 32.7 bits (71), Expect = 0.23
Identities = 29/114 (25%), Positives = 43/114 (37%)
Frame = +1
Query: 226 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 405
+ C AW+ S + + N H Y K HD ++ DW P ++ IVT
Sbjct: 148 VYCVAWDSTSSNVLYC---NADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTG 204
Query: 406 SVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISIC 567
D VW DG + T + W+ FAVGS ++ +C
Sbjct: 205 GEDLKFKVW----DGFGQILFNSSVHDYPITSISWNTDGTLFAVGS-HNILRLC 253
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 32.7 bits (71), Expect = 0.23
Identities = 29/114 (25%), Positives = 43/114 (37%)
Frame = +1
Query: 226 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 405
+ C AW+ S + + N H Y K HD ++ DW P ++ IVT
Sbjct: 148 VYCVAWDSTSSNVLYC---NADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTG 204
Query: 406 SVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISIC 567
D VW DG + T + W+ FAVGS ++ +C
Sbjct: 205 GEDLKFKVW----DGFGQILFNSSVHDYPITSISWNTDGTLFAVGS-HNILRLC 253
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 241 WNKDRSQIAFSPNNNEVHIY-KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 417
++KD S I N++ V ++ K G K+ H + + ++ N I++CS D
Sbjct: 315 FSKDNSHILSGGNDHVVRVHGMKSGKCLKEMRG---HSSYITDVRYSDEGNHIISCSTDG 371
Query: 418 NAYVWTQGDDGKWATT 465
+ VW G G+ +T
Sbjct: 372 SIRVW-HGKSGECLST 386
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 319 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 444
W+ L HD R++ +D +P+ + + + DR +W Q D
Sbjct: 454 WQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSD 495
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 32.3 bits (70), Expect = 0.30
Identities = 24/107 (22%), Positives = 37/107 (34%)
Frame = +1
Query: 226 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 405
+ C AWN D I + + +D L H V G+ W+P+ + +
Sbjct: 483 VGCLAWNADT--ICSGSRDRTIMHRDIRCDDNDMGRKLTNHRQEVCGLKWSPDKQLLASG 540
Query: 406 SVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSG 546
D VW + T + N A + WSP + V G
Sbjct: 541 GNDNQLLVWNLRRNEPIQT---YTQHNAAVKALAWSPHHHGLLVSGG 584
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 241 WNKDRSQIAFSPNNNEVHIY-KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 417
++KD S I N++ V ++ K G K+ H + + ++ N I++CS D
Sbjct: 315 FSKDNSHILSGGNDHVVRVHGMKSGKCLKEMRG---HSSYITDVRYSDEGNHIISCSTDG 371
Query: 418 NAYVWTQGDDGKWATT 465
+ VW G G+ +T
Sbjct: 372 SIRVW-HGKSGECLST 386
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 319 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 435
W + +L +H V G+ + N +VTCS+D++ V++
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 31.1 bits (67), Expect = 0.70
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 223 PITCHAWNK-DRSQIA-FSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NR 393
P+ AWN+ D + IA F ++ EV I L H+ + G+ WAP++ +
Sbjct: 359 PLLRLAWNRNDHNYIATFGQDSKEVLILDLR-LPCTPVARLRNHEATINGLSWAPHSGSH 417
Query: 394 IVTCSVDRNAYVW 432
I T D A +W
Sbjct: 418 ICTAGDDYQALIW 430
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 280 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 432
NN +Y N K +L H L V +D AP++ VT SVD++ VW
Sbjct: 565 NNTCSVYFV--NTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVW 613
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Frame = +1
Query: 298 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGD-DGKW 456
Y N+W + H+ V + WAP + R+V+ D+N +W D +W
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWAFDDATNEW 194
Query: 457 ATTLVLLRINRAATCVKWSPMEN 525
L W P+ N
Sbjct: 195 ILEKTLAGHTDFVREAAWCPVTN 217
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 444 ISLSPDVSITV-NRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 319
++ P ++ V +T+ N +G + NPHH + FH++V +P
Sbjct: 250 LATMPSCNVQVLGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293
>U23176-7|AAC46713.4| 454|Caenorhabditis elegans Hypothetical
protein F21H12.1 protein.
Length = 454
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 202 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIY 300
TF C P++C +W++D ++ S +N + ++
Sbjct: 62 TFSAHCLPVSCLSWSRDGRKLLTSSADNSIAMF 94
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 301 KKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 438
K +GN W+++ + H V + WA P +IV TCS DR +W +
Sbjct: 47 KPDGN-WRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIWEE 93
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 367 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 456
+ + P+ R+ TC+ D +W + DG W
Sbjct: 23 VSFDPHGRRMATCASDMTMAIWDRKPDGNW 52
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 414
H W + +A + NN V Y K+GN + + +++ I W + + +
Sbjct: 40 HRWRPNGHTVAVACANNTVIYYDKKGN----VIDALNPTGKLIDIAWDKEGDVLAIAVAN 95
Query: 415 RNA-YVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGA 549
Y+W TC+ WSP +G+ A
Sbjct: 96 TGTIYLWDVNSRNTDTVESGATSSKELPTCLAWSPSTPTLVIGNNA 141
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 414
H W + +A + NN V Y K+GN + + +++ I W + + +
Sbjct: 40 HRWRPNGHTVAVACANNTVIYYDKKGN----VIDALNPTGKLIDIAWDKEGDVLAIAVAN 95
Query: 415 RNA-YVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGA 549
Y+W TC+ WSP +G+ A
Sbjct: 96 TGTIYLWDVNSRNTDTVESGATSSKELPTCLAWSPSTPTLVIGNNA 141
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 414
H W + +A + NN V Y K+GN + + +++ I W + + +
Sbjct: 40 HRWRPNGHTVAVACANNTVIYYDKKGN----VIDALNPTGKLIDIAWDKEGDVLAIAVAN 95
Query: 415 RNA-YVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGA 549
Y+W TC+ WSP +G+ A
Sbjct: 96 TGTIYLWDVNSRNTDTVESGATSSKELPTCLAWSPSTPTLVIGNNA 141
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 280 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 432
N++V I + + W N H V ++W+ + N V+ S DR A +W
Sbjct: 295 NHDVRISQHVVSSWGGDNG---HCRDVTALEWSADENMCVSGSSDRTAKIW 342
>Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical
protein F08G12.2 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/82 (20%), Positives = 39/82 (47%)
Frame = +1
Query: 187 MAQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMG 366
MA T+ I A++ D + +A S + ++ + G + + + + H VM
Sbjct: 28 MAPTMVLLGHEGEIYTGAFSPDGTCLATSGYDQKIFFWNVYG-ECENFSTIKGHSGAVMD 86
Query: 367 IDWAPNTNRIVTCSVDRNAYVW 432
+ + +++ +V+C D++ VW
Sbjct: 87 LKFTTDSSSLVSCGTDKSVRVW 108
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = +1
Query: 346 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 510
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 511 SPMENKFAVGSG 546
P+ N + +G
Sbjct: 138 HPVANNVLLTAG 149
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = +1
Query: 346 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 510
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 511 SPMENKFAVGSG 546
P+ N + +G
Sbjct: 138 HPVANNVLLTAG 149
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = +1
Query: 346 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 510
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 511 SPMENKFAVGSG 546
P+ N + +G
Sbjct: 138 HPVANNVLLTAG 149
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = +1
Query: 346 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 510
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 511 SPMENKFAVGSG 546
P+ N + +G
Sbjct: 138 HPVANNVLLTAG 149
>AF101319-4|AAC69352.1| 463|Caenorhabditis elegans Hypothetical
protein K08D9.2 protein.
Length = 463
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 451 KWATTLVLLRINRAATCVKWS---PMENKFAVGSGARLISICYFEKENNWWVSKAY*EAH 621
+W T+ L + AA KW+ P+E+K ++ ARLIS ++ + + ++K + E +
Sbjct: 58 EW-NTIRLEDVPHAANLQKWANLGPVESKNSLRGEARLISAFVYKDQISIIITKQHIEKY 116
Query: 622 SFDCDIY 642
C Y
Sbjct: 117 DVTCLYY 123
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 292 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 447
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 931 HIWMDERTDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLETDDLD 981
>AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical
protein Y87G2A.11 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.0
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Frame = +1
Query: 187 MAQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDW---KQTNNLVEHDLR 357
M++ L FG C + D I F N + K + N + + L+ R
Sbjct: 1 MSECLMFGMDCEARCMTSMTADEENICFLVGTNNIKNDKNQVNKLFMDPEASRLMSKTFR 60
Query: 358 -----VMGIDWAPNTNRIV-TCSVDRNAY-------VWTQGDDGKWATTLVLLRINRAAT 498
V I P + I+ TC+ D ++ +W +D + T+ L + +
Sbjct: 61 HPAGEVRAIAAHPTKSTILATCTADFSSLGGTHSITIWNIEEDKRTLETVSRLPTEQVMS 120
Query: 499 CVKWSPMENKFA 534
C++W P K A
Sbjct: 121 CLEWEPNSMKCA 132
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 364 GIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWAT-TLVLLRINRAATCVKWSPME 522
G+ W+ T + T + + Y+W + G+WA L ++ + WSP E
Sbjct: 233 GLAWSSLKTGDLATGDIIKKIYLWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTE 287
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 292 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 447
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 992 HIWMDEITDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLDTDNLD 1042
>Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical
protein F13D12.7 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 346 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 525
H ++ + WA ++ +V+ S D VW K + LR + TC ++P +
Sbjct: 54 HLAKIYAMHWASDSRNLVSASQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCA-YAPSGS 110
Query: 526 KFAVGSGARLISICYFE-KENNWWVSK 603
A G + SI + +E N VS+
Sbjct: 111 FVACGGLDNICSIYSLKTREGNVRVSR 137
>X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 346 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 525
H ++ + WA ++ +V+ S D VW K + LR + TC ++P +
Sbjct: 54 HLAKIYAMHWASDSRNLVSASQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCA-YAPSGS 110
Query: 526 KFAVGSGARLISICYFE-KENNWWVSK 603
A G + SI + +E N VS+
Sbjct: 111 FVACGGLDNICSIYSLKTREGNVRVSR 137
>AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeric G
protein beta subunit1 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 346 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 525
H ++ + WA ++ +V+ S D VW K + LR + TC ++P +
Sbjct: 54 HLAKIYAMHWASDSRNLVSASQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCA-YAPSGS 110
Query: 526 KFAVGSGARLISICYFE-KENNWWVSK 603
A G + SI + +E N VS+
Sbjct: 111 FVACGGLDNICSIYSLKTREGNVRVSR 137
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/72 (19%), Positives = 32/72 (44%)
Frame = +1
Query: 223 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 402
P+ AW+ D + ++ + +++ + +L H V +DW+P ++V+
Sbjct: 404 PVYQVAWSADSRLLVSGSADSTLKVFELKTKSLYY--DLPGHGDEVFTVDWSPEGTKVVS 461
Query: 403 CSVDRNAYVWTQ 438
D+ +W Q
Sbjct: 462 GGKDKVLKLWRQ 473
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +1
Query: 298 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGDDG 450
Y N+W + H+ V + WAP + R+V+ D+N +W G
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWALSQFG 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,302
Number of Sequences: 27780
Number of extensions: 339965
Number of successful extensions: 890
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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