Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d18
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    30   0.25 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    29   0.77 
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   3.1  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   5.4  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   7.2  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   9.5  
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    25   9.5  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   9.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   9.5  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 517 SDLLLQCIIVFLSHNFSECNPVYIIIHVTKNPANEVIKPSLVISHIPPYSSSS 359
           S LL    I+  +HN S C P+   + V KN   +++ P  +   +P    SS
Sbjct: 752 STLLQHKTIILFTHNVSLCLPIAENVIVLKNSTAQLVSPDSIQELVPSTFFSS 804


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 295 SPRNPFNGNSPQDSPKMIPIAWRIQYITSKNSSLSGHSEFLSRAFFHID 149
           SP +P + +SP+ +P + P++   Q +  + +S    S  L  +F H+D
Sbjct: 256 SPAHPVDLSSPETAPNISPVSPFAQLVKLEPTSPQKPSFALDSSFSHLD 304


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 202 SSLSGHSEFLSRAFFHIDSLHLFLFILSVCLAFVDIIVLFYKLFNYFYVKSEILQSYSRI 23
           S  SG    +SR    +DS   +  + S  L FVD +   Y+ + Y    SE+ +S +  
Sbjct: 4   SQRSGSFSSISRRRSRVDSRPTYFKVTSKDLGFVDQVSEEYEFYTYPKKASEV-ESVTET 62

Query: 22  FY*TKST 2
           F   +S+
Sbjct: 63  FQSNRSS 69


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 319 AFKMTNNSSPRNPFNGNSPQDSPKMIPIAWRIQYITSKNSSL 194
           A K   +SSP    N N  Q  PK I    RI+++  K +SL
Sbjct: 270 AVKRMQSSSPSTTSNTNEKQKGPKAIA---RIEFLIKKLTSL 308


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 265 PQDSPKMIPIAWRIQYITSKNSSLSGHSEFLSRAFFHIDSLHLFLFILSVCL 110
           P    K+  I   I ++ S+  ++      +  +FFHID + L  +I S+C+
Sbjct: 113 PPGPMKVEQIGHAIDHLVSETHTVDHLGSSIKASFFHIDDVPL-EWISSICM 163


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 87  KTIMSTKAKQTDNINKN-KCNESIWKKALDKNSEWPDKE 200
           KT    KAK+TD+I  N K  ++  K+  DK  E   KE
Sbjct: 453 KTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKE 491


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 328 ITAAFKMTNNSSPRNPFNGNSPQDSPKM 245
           ++AA   T  S+P +   G SPQ SP +
Sbjct: 450 LSAAATATPMSAPTSVLTGTSPQPSPSL 477


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 87  KTIMSTKAKQ-TDNINKNKCNESIWKKALDKNSEWPDKEEFLDVIYWMR 230
           K +++ +++Q +D +  N  + SI+ +  DK S    +EE    IY++R
Sbjct: 29  KDVLNYESRQKSDLLIPNSNSISIYNQIADKYSRKITREEIFSGIYFLR 77


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 346 LFTYTYITAAFKMTNNSSPRNP 281
           LF  T ++A  K+TN+SSP  P
Sbjct: 109 LFEDTTLSAIDKLTNDSSPSKP 130


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = -3

Query: 409 IKPSLVISHIPPYSSSSMLWKLFTYTYITAAFKMTNNSSPRNPFNGNSPQDSPKMIPIAW 230
           I+P    S +P  +  ++  KL   T      K    SSP+ P        S  + P+++
Sbjct: 632 IQPKQSSSQVPKENHHNIQSKLSINTEAATDLKANELSSPKTPEYCRGDDRSISLSPLSY 691

Query: 229 RIQ 221
           R++
Sbjct: 692 RLR 694


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 253 PKMIPIAWRIQ--YITSKNSSLSGHSEFLS 170
           P   P+A +    ++TSK SS+SGH + L+
Sbjct: 346 PSQQPVADKSSNLFVTSKQSSVSGHKDNLT 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,463
Number of Sequences: 5004
Number of extensions: 59852
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)