Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d18
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0080 - 535443-535481,535569-535698,536483-536586,536686-53...    62   4e-10
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406...    32   0.34 
04_04_1613 - 34779640-34779747,34780086-34780151,34781155-347812...    31   0.60 
10_08_0296 - 16595193-16595222,16595923-16596067,16597387-165974...    29   2.4  
12_02_0757 + 22845825-22846032,22848331-22848498,22848929-228494...    28   5.6  
08_02_0075 - 11953723-11956203,11958213-11958512                       28   5.6  
05_04_0316 - 20145615-20145733,20147632-20147701                       27   9.8  

>05_01_0080 -
           535443-535481,535569-535698,536483-536586,536686-536903,
           537755-537762,538146-538183,538475-538668,539168-539296,
           539392-539481,539726-539839,540008-540154,540228-540293,
           540876-540987
          Length = 462

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/98 (28%), Positives = 48/98 (48%)
 Frame = +3

Query: 171 DKNSEWPDKEEFLDVIYWMRQAXXXXXXXXXXXXXXXXXXXXXXFVILNAAVIYVYVNNF 350
           D  + W DK++ LD ++W+RQ                       FV ++  ++Y Y    
Sbjct: 365 DPEASW-DKDQLLDAVHWIRQVLGLACGLLWGAVPLVGAIWIALFVTISTGLVYWYYAYL 423

Query: 351 HNIDEEEYGGMWEITKEGFMTSFAGFLVTWIIMYTGLH 464
             IDEE++GG   + +EG   SF  FL++W ++Y+ +H
Sbjct: 424 LKIDEEDFGGHGALLQEGMFASFTLFLLSWTLIYSLVH 461


>11_01_0519 +
           4066776-4066892,4067042-4067099,4067322-4067608,
           4067706-4067822,4067898-4067958,4068042-4068133,
           4068547-4068632,4068926-4068975,4069077-4069117,
           4069222-4069392,4069875-4069942,4070088-4070148,
           4070471-4070757,4072008-4072172,4072759-4072760,
           4072829-4073139,4073600-4073787,4075231-4075482,
           4076035-4076114,4076199-4076399,4076959-4077014,
           4077137-4077328
          Length = 980

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -3

Query: 217 ITSKNSSLSGHSEFLSRAFFHIDSLHLFLFILS---VCLAFVDIIVLFYKLFNYFYVKSE 47
           I S+N    GH  F+S  +  ++ LH FLFIL    V   FV +++   K++++   +++
Sbjct: 146 IQSQNVCSEGHEPFVS--YEGLEQLHRFLFILGITHVLYTFVTVVLSMIKIYSWRKFETQ 203

Query: 46  ILQ 38
             Q
Sbjct: 204 ACQ 206


>04_04_1613 -
           34779640-34779747,34780086-34780151,34781155-34781214,
           34781690-34781795,34781965-34782110,34782934-34783016,
           34783157-34783194,34783441-34783472,34783732-34783828,
           34783951-34784234,34784752-34784904
          Length = 390

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -3

Query: 226 IQYITSKNSSLSGHSEFLSRAFFHIDSLHLFLFI 125
           IQ I  +N  +SGH EF+SR  +H+ ++ L L I
Sbjct: 342 IQKIQLQNEEMSGHGEFVSRV-YHVRTIELDLHI 374


>10_08_0296 -
           16595193-16595222,16595923-16596067,16597387-16597488,
           16597630-16597685,16598245-16598399,16598755-16598918,
           16599116-16599237,16599542-16599754,16599874-16600023,
           16600909-16600959
          Length = 395

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 373 YSSSSMLWKLFTYTYITAAFKMTNNSSPRNPFNGNSPQDSPKMIPI 236
           YS  +     + Y +I ++  MT++  P + +NG+SPQD   ++ I
Sbjct: 350 YSCHNPFMNFYRYLHIGSSALMTSSVVP-DTYNGHSPQDRGSLVGI 394


>12_02_0757 +
           22845825-22846032,22848331-22848498,22848929-22849434,
           22849890-22850151,22851708-22851942,22854240-22854496,
           22854592-22854635
          Length = 559

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 148 SLHLFLFILSVCLAFVDIIVLFYKLFNYFY 59
           S  LF+   ++ LAF+  ++ FY+  +YFY
Sbjct: 55  SCRLFVVSSNISLAFMSCLLFFYRQKDYFY 84


>08_02_0075 - 11953723-11956203,11958213-11958512
          Length = 926

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 108 AKQTDNINKNKCNESIWKKALDKNSEWPDKEEFLDVI 218
           AK    + +   NE  W + LD N EW  +E   D+I
Sbjct: 392 AKSVGTLLRRNINEDYWTRILDSN-EWKLQESIDDII 427


>05_04_0316 - 20145615-20145733,20147632-20147701
          Length = 62

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 601 KGYASTWTDTRIKIKGIQNCFNFTLANTSDLLLQCIIVF 485
           K YAS WT      KGI+      L    D+LL  ++ F
Sbjct: 9   KPYASWWTSPLAISKGIEEADEDGLVRQPDILLVWVVTF 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,129,343
Number of Sequences: 37544
Number of extensions: 320309
Number of successful extensions: 705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)