Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d15
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    31   0.63 
06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840     30   1.9  
06_03_0654 + 23173253-23173812,23174365-23175262                       29   4.4  
03_02_0715 + 10621789-10623243,10624074-10625018                       29   4.4  
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164...    28   7.7  

>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 139 EWNVQETRCGCCRWRFGGITRSIIFGEERTSRSPV-RISRRHKKY 270
           EW+  E+RC  C+ RF  IT+S +      SR  V R+ +R + Y
Sbjct: 399 EWSKVESRCPLCKRRFTTITKSSMADLGLGSRKAVIRVEKRDQVY 443


>06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840
          Length = 299

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 585 RRLTPKEIVEVNADLIIGADGAFSAVRK 668
           R L   E VEV  DL++ ADG  SA+R+
Sbjct: 16  RVLRTGETVEVAGDLLVAADGCTSAIRR 43


>06_03_0654 + 23173253-23173812,23174365-23175262
          Length = 485

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +1

Query: 97  FVKYYIQHSDGEFRE---WNVQETR--CGCCRWRFGGITRSIIFG 216
           + KYY+   D   R    +NV E +  C CCR+ F  I    + G
Sbjct: 340 YSKYYVDRDDPPTRHTVFYNVAEKKAWCDCCRYAFSAILCRHVLG 384


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 139 EWNVQETRCGCCRWRFGGITRSI--IFGEERTSRSPVRISRRHKKY 270
           +W+  E+RC  C+ RF  IT+S     G E T+ S +R+  R + Y
Sbjct: 443 QWSKVESRCPLCKRRFTTITKSSKEDTGLELTN-SVIRVEERDQVY 487


>11_01_0209 -
           1642473-1642579,1642783-1642826,1642935-1643023,
           1643114-1643158,1643484-1643591,1643691-1643776,
           1643917-1644004,1644211-1644387,1644720-1644795,
           1644898-1644947,1645030-1645092,1645332-1645434,
           1645513-1645615,1645731-1645791,1646268-1646308,
           1646792-1646825
          Length = 424

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -3

Query: 643 SAPMIRSALTSTISXGVSLLK 581
           SA M++SAL  TIS G+SLL+
Sbjct: 321 SAAMMKSALAITISTGISLLQ 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,072
Number of Sequences: 37544
Number of extensions: 329962
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)