Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d13
         (247 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5ZCX1 Cluster: Putative uncharacterized protein; n=1; ...    31   4.9  
UniRef50_Q8IER0 Cluster: Putative uncharacterized protein PF13_0...    31   4.9  
UniRef50_Q9AW84 Cluster: Putative ATP-dependent RNA helicase CDC...    30   8.6  

>UniRef50_A5ZCX1 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides caccae ATCC 43185|Rep: Putative
           uncharacterized protein - Bacteroides caccae ATCC 43185
          Length = 1282

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 64  SINSIILITMKGTFKSVLKLNYNRKKFYRKSYHKTLIVLHC 186
           ++ S +  T KG  K     NY+  +FY  S  +T +VL C
Sbjct: 189 NVESFVASTGKGLNKEFFNFNYDITRFYINSQLQTCVVLKC 229


>UniRef50_Q8IER0 Cluster: Putative uncharacterized protein
           PF13_0027; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF13_0027 - Plasmodium
           falciparum (isolate 3D7)
          Length = 771

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 64  SINSIILITMKGTFKSVLKLNYNRKKFYRKSY 159
           SINS     ++  ++S++K NYN  K+Y K Y
Sbjct: 430 SINSQTKSFLESFYQSLIKCNYNLSKYYSKKY 461


>UniRef50_Q9AW84 Cluster: Putative ATP-dependent RNA helicase CDC28;
           n=1; Guillardia theta|Rep: Putative ATP-dependent RNA
           helicase CDC28 - Guillardia theta (Cryptomonas phi)
          Length = 615

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 55  FTKSINSIILITMKGTFKSVLKLNYNRKKFYRKSYHKTLIVLH 183
           FTKS+N  IL+ + G ++     N   + FYR S    +++LH
Sbjct: 203 FTKSVNENILVFLPGLYEIYRVKNTLNEIFYRFSEKIYILILH 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,769,678
Number of Sequences: 1657284
Number of extensions: 1626890
Number of successful extensions: 4157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4156
length of database: 575,637,011
effective HSP length: 60
effective length of database: 476,199,971
effective search space used: 10000199391
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)