Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d13
         (247 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   2.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    20   4.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    19   6.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    19   6.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 154 ISDKTFFYYNLILIHF 107
           I + T FYYN+I I F
Sbjct: 941 IDNWTSFYYNIIPILF 956


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 154 ISDKTFFYYNLILIHF 107
           I + T FYYN+I I F
Sbjct: 941 IDNWTSFYYNIIPILF 956


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 154 ISDKTFFYYNLILIHF 107
           I + T FYYN+I I F
Sbjct: 941 IDNWTSFYYNIIPILF 956


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 154 ISDKTFFYYNLILIHF 107
           I + T FYYN+I I F
Sbjct: 941 IDNWTSFYYNIIPILF 956


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 19.8 bits (39), Expect = 4.5
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 185 VYSCNNCFN 211
           +Y CN C+N
Sbjct: 284 LYICNQCYN 292


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 202 VITRVNSAIQSMFYDMISDKTFFYY 128
           ++T + SA    F    SDK   YY
Sbjct: 3   LLTLILSATTLQFTSAASDKIICYY 27


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 185 VYSCNNCFNI 214
           VY C+N FN+
Sbjct: 160 VYCCDNNFNV 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,090
Number of Sequences: 336
Number of extensions: 579
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3749515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)