Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d13
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   1.8  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   2.4  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    23   4.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    23   5.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   5.6  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    22   9.8  

>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 202 VITRVNSAIQSMFYDMISDKTFFYY 128
           ++ R+ S + + FY  I DKT  +Y
Sbjct: 107 IMKRIPSTVVTPFYGKIQDKTIEFY 131


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 187 NSAIQSMFYDMISDKTFFYYNLILIHF*TCLSLL 86
           NS +  +F D +S  TF+++N +  +F   L ++
Sbjct: 217 NSYVFRLF-DRVSSSTFYFFNSLFAYFIILLRII 249


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 175 QSMFYDMISDKTFFYYNLILI 113
           ++M YD   D   F+YN IL+
Sbjct: 569 ENMRYDAHMDSIEFFYNFILV 589


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 190 VNSAIQSMFYDMISDKTFFYYNLILI 113
           VN+ +    Y   SDK    YNLI I
Sbjct: 817 VNTCVLDFLYKSFSDKVQENYNLIRI 842


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 61   KSINSIILITMKGTFKSVLKLNYNRKKFYRKSYHKTLIVLH 183
            KSIN + L  +    +S  K N N   +  + YH+   +++
Sbjct: 2776 KSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWIIN 2816


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 155 HIIKH*LYCTVYSCN 199
           HI  H LYC  Y  N
Sbjct: 168 HIFGHLLYCMAYRAN 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,094
Number of Sequences: 5004
Number of extensions: 8157
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)