Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d13
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   0.32 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   3.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   3.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    19   9.1  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 0.32
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 118 KLNYNRKKFYRKSYHKTLIV 177
           K NYN   + +K Y+K  I+
Sbjct: 103 KYNYNNNNYNKKLYYKNYII 122


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 118 KLNYNRKKFYRKSYHKTL 171
           K NYN   +   +Y+K L
Sbjct: 95  KYNYNNNNYNNNNYNKKL 112


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 118 KLNYNRKKFYRKSYHKTL 171
           K NYN   +   +Y+K L
Sbjct: 95  KYNYNNNNYNNNNYNKKL 112


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 127 YNRKKFYRKSYHKTLIV 177
           YN   + +K Y+K  I+
Sbjct: 331 YNYNNYNKKLYYKNYII 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,804
Number of Sequences: 438
Number of extensions: 529
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)