Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d12
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    62   7e-11
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    30   0.32 
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   1.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.0  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   4.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   7.0  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   9.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.2  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 54/162 (33%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
 Frame = +1

Query: 166 VLVKAEWISVDPYLRA------YNSYQAVPYDQ----FSYQVGVVVQSRDSNYPVGTRVV 315
           VL+K  + SVDPYLR       + SY   P +     ++  V  VV+S    Y  G  VV
Sbjct: 46  VLLKNIYTSVDPYLRMRMQSPKHASY-IPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVV 104

Query: 316 AHKGWCDHYVFTPSTQPN--TPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICK 489
              GW + Y F          P +  YKLP +        VG++GMP  TAY G   I K
Sbjct: 105 FVSGW-EEYTFVSKQALGFLQPINNPYKLPLIDF------VGSLGMPSQTAYCGLKHIGK 157

Query: 490 PKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVIGFAGTDDKVK 615
           PK                + GQ+AK  G  V+G  G+D+K K
Sbjct: 158 PKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFK 199


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 7/161 (4%)
 Frame = +1

Query: 124 ELVEFVIPPLIDGEVLVKAEWISVDPYLRAYNSYQAVPYDQFSYQVG---VVVQSRDSNY 294
           E+    IP   +GE+LVK E  +++P     N+    PY  +   VG          +++
Sbjct: 24  EIQSVPIPQPKNGELLVKIEAAAINP-SDLMNATGGFPYTVYPRIVGRDYAGTVISGASH 82

Query: 295 PVGTRVVAHKGWCDHYVFT-PSTQPN---TPKDRIYKLPDLQGLSPSLGVGAVGMPGATA 462
            VGTRV    G      FT   T       P+    ++P     + +    +VG+P  TA
Sbjct: 83  LVGTRVFGTSG--SELSFTKDGTHAEYCIIPEKAAVRMPSNLSFTEA---ASVGVPFTTA 137

Query: 463 YFGFLEICKPKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVI 585
           Y   L   + K               S V QIA+  GC+VI
Sbjct: 138 YLA-LSRGETKGSDIVLVVGALGAVGSAVCQIAEDWGCKVI 177


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +1

Query: 205 LRAYNSYQAVPYD---QFSYQVGVVVQSRDSNYPVGTRVVAHKGWCDHYVFTPSTQPNTP 375
           L AY +YQ V Y+   + SY+  ++    +     G  V+  + W    +  P++     
Sbjct: 133 LNAYFAYQVVGYNGTGRVSYREALLAVFVEGFIFTGLTVIGLRQWLARVI--PASLKFAT 190

Query: 376 KDRIYKLPDLQGLSPSLGVGAVG 444
              I     + GLSPS G+G +G
Sbjct: 191 GAGIGLYLTIIGLSPSAGLGVIG 213


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 28  KKTQGPTKVEMTSARKYVV--KNHFKGVPKQEDYELVEFVIPPL 153
           K    P  +++ S R + +   NHF G+P   D  LV+F I  L
Sbjct: 576 KLISSPAIIQLVSKRSHPMAFSNHFIGLPDNADPGLVDFSISML 619


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +2

Query: 155 STARSSLKPNGSASTRI*GLTTLTKLYPTTSSVIKSVLLSNQGIATIR*ERELLRTKDGA 334
           S A SS   +  AS+     T+ T     TSS + S   SN   ++      L  T    
Sbjct: 148 SLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSAT 207

Query: 335 TTTSSL 352
            T+SSL
Sbjct: 208 ATSSSL 213


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 589 FAGTDDKVKWLEEEL 633
           F+ +DD+V WLEE+L
Sbjct: 542 FSNSDDRVAWLEEQL 556


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 349 TPSTQPNTPKDRIYKL-PDLQGLSPSLGVGAVG 444
           TP  QP  PK R ++L PDL  ++   G  ++G
Sbjct: 148 TPKPQPGNPKPRYFRLKPDLSVIN-RYGFNSIG 179


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 325 LCAQQLSFLPDSCYPLIGQQH 263
           LC  + SF  D   PL+G QH
Sbjct: 240 LCGSENSFNDDGFNPLVGSQH 260


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 314 LRTKDGATTTSSLLVRNLTLQRIVFINYQICRDCRRRWA 430
           LR+   A  T   ++RN +       ++ +CRDC  + A
Sbjct: 55  LRSSSVACNTCLKIIRNDSFHCTKCFDFDVCRDCYAKQA 93


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 105 YTFKVVLHDVLPS*GHLDFCGSLSF 31
           YT+ ++ H+VL S  +  F GSL F
Sbjct: 712 YTYPLIEHEVLDSKNYFVFKGSLLF 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,233
Number of Sequences: 5004
Number of extensions: 50526
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)