Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5d12
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46935-8|CAL36511.1| 365|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z46935-7|CAL36510.1| 373|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 28 6.5
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 28 6.5
AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical ... 28 6.5
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 27 8.6
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 27 8.6
>Z46935-8|CAL36511.1| 365|Caenorhabditis elegans Hypothetical
protein M106.3b protein.
Length = 365
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 394 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAKI 567
LP + SPS+ + G+ G TA G + + SL GQIA+I
Sbjct: 138 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 197
Query: 568 KGC-RVIGFAGTDDKVKWLEEELG 636
+GC +VIG G+DDK L+ E G
Sbjct: 198 EGCSKVIGICGSDDKCTVLKREFG 221
>Z46935-7|CAL36510.1| 373|Caenorhabditis elegans Hypothetical
protein M106.3a protein.
Length = 373
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 394 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAKI 567
LP + SPS+ + G+ G TA G + + SL GQIA+I
Sbjct: 146 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 205
Query: 568 KGC-RVIGFAGTDDKVKWLEEELG 636
+GC +VIG G+DDK L+ E G
Sbjct: 206 EGCSKVIGICGSDDKCTVLKREFG 229
>Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical
protein F39B2.3 protein.
Length = 328
Score = 35.5 bits (78), Expect = 0.032
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 7/174 (4%)
Frame = +1
Query: 124 ELVEFVIPPLIDGEVLVK--AEWIS-VDPYLRA--YNSYQAVPYDQFSYQVGVVVQSRDS 288
E VE +P L +VLV+ A ++ VD Y+RA Y +PY G V +S
Sbjct: 25 EAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPYVPGKDGAGFVELVGES 84
Query: 289 --NYPVGTRVVAHKGWCDHYVFTPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATA 462
N VG RV W ST +R ++LP+ G+S G ++G+P TA
Sbjct: 85 VKNVKVGDRV-----WYGSEA--DSTAEYVAVNRPFELPE--GVSFEEGA-SLGVPYLTA 134
Query: 463 YFGFLEICKPKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVIGFAGTDDKVKWLE 624
Y + K S + Q+A + +G AG+ D +++++
Sbjct: 135 YRALFHLAGAKTGDVILVHGASGGVGSALMQLAAWRNIEAVGTAGSADGIRFVK 188
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 481 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 377
F RN N PA P + P A AT A+L Y+Y P
Sbjct: 574 FFRNHNTLGEPAQDPAVWPSVAAATKIANLFRYQYLP 610
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 481 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 377
F RN N PA P + P A AT A+L Y+Y P
Sbjct: 641 FFRNHNTIGAPAQDPAVWPSVAAATKKANLFRYQYLP 677
>AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical
protein T05A8.4 protein.
Length = 736
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 82 VKNHFKGVPKQEDYELVEFVIPPLIDGEVLVKAEWIS 192
VKNHF KQ+ E++ ++ +D +L+ +W++
Sbjct: 416 VKNHFDHEAKQQVEEMISLIMESFVD--LLLSEDWLT 450
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 31 KTQGPTKVEMTSARKYVVKNHFKGVPKQEDYELVEFVIPP 150
K P +V R +V+ +H K ++DY ++ IPP
Sbjct: 707 KDASPLEVSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPP 746
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 31 KTQGPTKVEMTSARKYVVKNHFKGVPKQEDYELVEFVIPP 150
K P +V R +V+ +H K ++DY ++ IPP
Sbjct: 707 KDASPLEVSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPP 746
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.137 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,209
Number of Sequences: 27780
Number of extensions: 289143
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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