Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5d11
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.25
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 1.3
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 3.1
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 26 3.1
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 3.1
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 26 3.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 4.1
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 4.1
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 7.2
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 7.2
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 7.2
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 7.2
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 9.5
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 9.5
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 25 9.5
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.9 bits (64), Expect = 0.25
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 16 LTNLMKKMLSYGQYNMDKYTYV 81
LTN +K+++SY +YNM + TY+
Sbjct: 193 LTNYLKEVISYRKYNMMEETYI 214
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 223 KVEKITTDELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFM 348
K +KI +L F EYD+D S+ + + N D F+
Sbjct: 367 KAQKINIGQLNRFFSEYDLDASDFLSSSVHKNNNSYLDQYFL 408
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 3.1
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = -3
Query: 186 REHVLENGEDVANSFHDHPEDR 121
++H++EN +A+ FH+ E +
Sbjct: 26 KDHIVENSSPIASKFHEFDEQK 47
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 160 FTVFKNMLP--KYTREQFSFPGVKVEKITTDELVTF--VDEYDMDISNAMYLDATEMQNK 327
+++F + P KY + GV V + + YD + S A L+A +M N
Sbjct: 146 YSLFSTLAPNLKYFPDWLKEAGVSVSDHRAFNIFVSKAIQSYDDEQSFAFLLEAVKMDNS 205
Query: 328 TSDMTFMARMRRLNHHP 378
T+D ++R + P
Sbjct: 206 TADEAVRELVQRAVNSP 222
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 141 ETSLQHLHRFQEHAPEIYSRTVQLPRSQSGENYHR 245
+ QHLH H+ +I + T +LP S E + +
Sbjct: 291 DVDCQHLHSLDTHSLDISTHTFKLPPLMSKEVFQQ 325
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = +1
Query: 187 KYTREQFSFPGVKVEKITTDELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFMARMRRL 366
KY P V ++ TDE+ +F+ D+ NA+ +D + + + + + L
Sbjct: 76 KYVASVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVVIL 135
Query: 367 NHHPFQVSIDVMS 405
+ P++ + +S
Sbjct: 136 SSSPYENILSALS 148
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 104 LPVSAILS--SG*S*NEFATSSPFSRTCSRNILANSSASPESKWRKLPPMSWSHS 262
LP S + S S S + S+ S N+L N + +P PP++WS S
Sbjct: 55 LPSSGLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNKPPLTWSPS 109
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 114 PRSCLLDDHETSLQHLHRFQEHAPEIYSRTV 206
P+ +L HE S++HL R E A + V
Sbjct: 133 PKEKILTAHEASVRHLRRLTESAEDFLGTKV 163
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -3
Query: 423 SIDSFVGHDINRHLERMVIEAAHAGHKGHIGCLVLHLS 310
S+ V +D H+E V G GH G V ++
Sbjct: 736 SLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 31 KKMLSYGQYNMDKYTYVPTSLDMYTTCLRDPVFWMIMKRVCNIF 162
K++LS Y + Y+ + L MY +R ++ +K + NIF
Sbjct: 30 KRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKALSNIF 73
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 97 MYTTCLRDPVFWMIMKRVCNIFTVFKNMLPKYTR 198
+Y+TC V +I+ VC F F+ L K +
Sbjct: 265 IYSTCTISAVLLLIVSSVCIPFWTFERTLAKLAK 298
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 97 MYTTCLRDPVFWMIMKRVCNIFTVFKNMLPKYTR 198
+Y+TC V +I+ VC F F+ L K +
Sbjct: 232 IYSTCTISAVLLLIVSSVCIPFWTFERTLAKLAK 265
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 414 SFVGHDINRHLERMVIE 364
SFVGH HLER+V E
Sbjct: 407 SFVGHPKLEHLERIVTE 423
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 426 GPHLPGSQVRLHGQAHERQRQTPRHVR 506
GP PGS+ +G A +R P+ V+
Sbjct: 485 GPGEPGSKENYYGNAFTTERTVPKTVK 511
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 351 GHKGHIGCLVLHLS 310
GHKG + CL +H+S
Sbjct: 377 GHKGRVRCLSVHVS 390
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 159 LHRFQEHAPEIYSRTVQLPRSQSGENY 239
LH + EHAP Y+ T S ENY
Sbjct: 503 LHEYVEHAPNSYAST----HSTESENY 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,224
Number of Sequences: 5004
Number of extensions: 44164
Number of successful extensions: 156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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