Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5d11
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 30 1.0
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 30 1.0
03_01_0344 + 2704860-2705156,2705249-2705494 29 1.8
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 29 2.4
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 29 3.1
10_01_0105 + 1287423-1289924 29 3.1
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 28 4.1
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 28 5.5
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448... 27 7.2
01_06_0397 + 29017608-29018510,29018751-29019083 27 7.2
10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617... 27 9.6
08_02_1448 - 27168389-27172021 27 9.6
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 27 9.6
03_02_0164 - 6066744-6067637 27 9.6
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 27 9.6
01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070 27 9.6
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 27 9.6
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 100 TCPRKSARRCTCPCCIGH 47
TCPR +AR C+ PC GH
Sbjct: 47 TCPRCNARYCSLPCYKGH 64
>01_03_0075 - 12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +1
Query: 154 NIFTVFKNMLPKYTREQFSFPGVKVE-KITT---DELVTFVDEYDMDISNAMYLDATEMQ 321
NIF +F + + F + +E K+ T DE V+ Y DI ++ + E+
Sbjct: 811 NIFRIFGGDRIQGLMQAFRVEDLPIESKMLTRALDEAQRKVENYFFDIRKQLF-EYDEVL 869
Query: 322 NKTSDMTFMARMRRLNHHPFQVSIDVMSDKTVDAVVRIFLGP 447
N D + R R L + I ++ T+D ++ +GP
Sbjct: 870 NSQRDRVYAERRRALASDSLESLIVEYAELTIDDILEANIGP 911
>03_01_0344 + 2704860-2705156,2705249-2705494
Length = 180
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 12 PLDQLDEENAELWPIQHGQVHLRADFLGHVHYLSPRSCLLDDHETSLQHLHRFQEHAPEI 191
PL Q ++ + W I+H G Y +PRS D TSLQ ++ F E
Sbjct: 124 PLLQHQQQQQQAWQIEHESTMTSTQSSGC--YSAPRS----DGSTSLQDMYCFGEQEEGS 177
Query: 192 YSR 200
YSR
Sbjct: 178 YSR 180
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 96 HVHYLSPRSCLLDDHETSLQHLHRFQEH 179
HVHY++P D E L LH F +H
Sbjct: 117 HVHYVAPSFWAWKDGERRLAKLHNFVDH 144
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 205 FSFP--GVKVEKITTDELVTFVDEYDMDISNAMYLDA-TEMQNKTSDM 339
FS P +VE++T D+L+ + ++ A+++DA +E+ N T +
Sbjct: 338 FSMPLCNTEVEQVTEDDLIELSEIQKRNLGQALHIDAMSEVDNTTQSL 385
>10_01_0105 + 1287423-1289924
Length = 833
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +1
Query: 280 DISNAMYLDATEMQN--KTSDMTFMARMRRLNH 372
++SN YLD +EMQN ++D+++++R+ L +
Sbjct: 179 NLSNLRYLDVSEMQNVVYSTDLSWLSRLHLLEY 211
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -3
Query: 231 LHFDSGEAELFASIFRE-HVLENGEDVANSF---HDHPEDRIAETGSVHVQGSRH 79
L F S E FA+I E VL++ D+A S + PE +E G + ++GSRH
Sbjct: 569 LKFLSQVFENFAAILSELDVLQSFADLATSSPIPYVRPEITASEEGDIILEGSRH 623
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 411 NCRCCGPHLPGSQVRLHGQAHERQRQTPRH 500
+C G HL G+QV Q H R P H
Sbjct: 113 DCIVAGDHLRGAQVAASYQRHVRDNPNPSH 142
>08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,
4485434-4485660,4486238-4486324,4486408-4487114,
4487206-4487270,4487323-4487837,4487898-4487991,
4488116-4488398,4488494-4488689,4488913-4489254
Length = 1721
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 247 ELVTFVDEYDMDISNA--MYLDATEMQNKTSDMT 342
E+ +F +++++DI N Y+D T+ QNK + T
Sbjct: 1525 EVKSFCEKHEIDIPNLNNKYVDVTKSQNKNDNTT 1558
>01_06_0397 + 29017608-29018510,29018751-29019083
Length = 411
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 474 HEPAHAVVLGTQEDADHSIDSFVGHDINRHLERMVIEAAHA 352
HEP V+ + ADH ID V + R L+R+V E A
Sbjct: 104 HEPFRQVLKRLRWTADHEIDR-VNLTLGRQLDRIVAERTAA 143
>10_08_0918 -
21560635-21560795,21560847-21560935,21561696-21561760,
21561841-21561892,21562271-21562356,21562457-21562626,
21562748-21562831,21563284-21563354,21563461-21563621
Length = 312
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 6 SYPLDQLDEENAELWPIQHGQVHLRADFLGHVHYLSPRSCLLDDHETSLQH 158
SYPL + +W +Q + + A ++ +H S L DH S H
Sbjct: 235 SYPLLNMTTLWTSIWAVQADDLLIEATYMSILHIRDYMSLLSLDHAISCLH 285
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 48 WPIQH--GQVHLRADFLGHVHYLSPRSCLLDDHETSLQHLHR 167
WP + +HLR ++ H H L + ++ SL HL R
Sbjct: 1028 WPTEELTSLIHLRHLYIEHCHRLEGKGSSSEEKFMSLSHLER 1069
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 190 YTREQFSFPGVKVEKITTDELVTFVDEYDMDISN 291
Y R + VK+E + D+L+ +D Y D+ N
Sbjct: 59 YERLKKMSSSVKIESVVPDDLMAKMDRYKKDLQN 92
>03_02_0164 - 6066744-6067637
Length = 297
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 414 CRCCGPHLPGSQ-VRLHGQAHERQRQTPRHVR 506
C C H P SQ + H AH+R+RQ + V+
Sbjct: 103 CHYCCRHFPTSQALGGHQNAHKRERQHAKRVQ 134
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 229 EKITTDELVTFVDEYDMDISNAMYLDATEMQNKTSD 336
+++T DE+ + V E D+ +SN Y +T ++T+D
Sbjct: 464 KEVTIDEVDSKVSEGDILLSNQGYSSSTSSSDETAD 499
>01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070
Length = 181
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 341 PLWPACAASITIRSRCRLMSCPTKLSMLWSASSWVP 448
P PAC T RS R C + W+A +W P
Sbjct: 44 PAPPACYTRSTSRSIGRCRGCCRRRPRGWAAHAWQP 79
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 384 GVD*CHVRQNCRCCGPHLPGSQVRLHGQAHERQR 485
G D CH NC LPG Q R G +R++
Sbjct: 514 GEDECHDEDNCETGNYTLPGDQQRSSGGILKRRK 547
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,155,176
Number of Sequences: 37544
Number of extensions: 323742
Number of successful extensions: 1043
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -