Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d10
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.37 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.37 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.37 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   6.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 458 SDGELKATVVETLTGRESMIGGGDYDCVTCCGLSLCDHL 342
           SD  +K TVV +    + ++G  ++ CV  C + +  +L
Sbjct: 317 SDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYL 355


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 458 SDGELKATVVETLTGRESMIGGGDYDCVTCCGLSLCDHL 342
           SD  +K TVV +    + ++G  ++ CV  C + +  +L
Sbjct: 232 SDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYL 270


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 458 SDGELKATVVETLTGRESMIGGGDYDCVTCCGLSLCDHL 342
           SD  +K TVV +    + ++G  ++ CV  C + +  +L
Sbjct: 551 SDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYL 589


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 231 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 112
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 231 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 112
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 74  PPFSIKTKMSRYREWDLSCKVY 139
           P   I + M R   W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 129 AKCTWATWVLMRLNMK 176
           +KCTW      R+N+K
Sbjct: 68  SKCTWTITSYHRINLK 83


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 74  PPFSIKTKMSRYREWDLSCKVY 139
           P   I + M R   W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,000
Number of Sequences: 438
Number of extensions: 2383
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)