Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d09
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    28   0.71 
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    27   2.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   8.7  

>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 250 SKGT*RRFVRISY*FHQYYEHVCLSTFPNLI-HRHFSKVIYHLAANLN 110
           SKG  R+ + I    H  Y+H+ +S   N + H H S + Y L + +N
Sbjct: 211 SKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMN 258


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 158 SPSLFKGNIPPGCKSELYFVETDEELDSELIDLFSARIFFLRFIF 24
           S  L K N+PP      Y    DEE   E +DLF   I   +F+F
Sbjct: 8   SEVLTKKNLPPLSLYNFYIYIRDEENAIEFLDLF-LDIMLHKFLF 51


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 456 KSTQNNSLWYGIGKQRS*YLHYLNTCCDIK--IIYKI 352
           K++Q+ ++W  + K+     H+L +C D+   I Y I
Sbjct: 277 KTSQHPAIWICVSKKAPSASHFLQSCPDLSATIFYDI 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,756
Number of Sequences: 5004
Number of extensions: 31217
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)