Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5d08
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0111 - 10129531-10129563,10129645-10129812,10130366-101304... 201 5e-52
04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130... 199 1e-51
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 199 2e-51
03_03_0010 + 13712339-13712392,13712506-13712582,13712715-137127... 174 6e-44
06_01_0600 + 4332886-4332896,4332968-4333067,4333588-4333664,433... 164 5e-41
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 74 1e-13
06_03_0385 - 20234160-20234798,20234888-20235238 29 3.3
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 28 5.7
12_02_0161 + 14659338-14659467,14659553-14659888,14660034-146602... 28 7.6
01_01_0862 + 6714041-6714358,6714462-6714603,6715511-6715735,671... 28 7.6
>11_03_0111 -
10129531-10129563,10129645-10129812,10130366-10130484,
10130589-10130650,10131043-10131119,10131659-10131838
Length = 212
Score = 201 bits (490), Expect = 5e-52
Identities = 94/157 (59%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Frame = +2
Query: 116 TSIHEFTVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 295
TS+H+ +VK+IKG DVKL Y+G V +IVNVAS+CGLT +NYK+LN LYE+Y E KGL I
Sbjct: 52 TSVHDISVKDIKGNDVKLSEYEGKVLLIVNVASKCGLTNSNYKELNVLYEKYKE-KGLEI 110
Query: 296 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLG 472
LAFPCNQFAGQEPG+ EEI R K +F +F+K+DVNG A+PL+K+LK ++GG LG
Sbjct: 111 LAFPCNQFAGQEPGSNEEIEQTVCTRFKAEFPIFDKIDVNGKEAAPLYKFLKSQKGGFLG 170
Query: 473 SFIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 583
IKWNFTKF++ KDG VER+ P T PL + ++K
Sbjct: 171 DGIKWNFTKFLVGKDGKVVERYAPTTSPLKIENDIQK 207
>04_04_0755 +
27812097-27812144,27812377-27812462,27812976-27813037,
27813256-27813374,27813511-27813678,27813766-27813798
Length = 171
Score = 199 bits (486), Expect = 1e-51
Identities = 92/162 (56%), Positives = 125/162 (77%), Gaps = 4/162 (2%)
Frame = +2
Query: 110 AATSIHEFTVKNIK---GEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGES 280
+ATS+H+FTVK ++ G+DV L YKG V +IVNVASQCGLT +NY +L++LYE+Y +
Sbjct: 6 SATSVHDFTVKGVQDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KV 64
Query: 281 KGLRILAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQ 457
+G ILAFPCNQF GQEPG+ EEIV FA R K ++ +F+KVDVNG+NA+PL+KYLK +
Sbjct: 65 QGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNK 124
Query: 458 GGTLGSFIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 583
GG G IKWNF+KF+++K+G V+R+ P T PL + K ++K
Sbjct: 125 GGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKK 166
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 199 bits (485), Expect = 2e-51
Identities = 89/159 (55%), Positives = 121/159 (76%), Gaps = 1/159 (0%)
Frame = +2
Query: 110 AATSIHEFTVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGL 289
+A S+H+FTVK+ G+DV L +KG V +IVNVASQCGLT +NY +L++LYE+Y + +G
Sbjct: 76 SAASVHDFTVKDASGKDVDLSTFKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KDQGF 134
Query: 290 RILAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGT 466
ILAFPCNQF GQEPG EEIV FA R K ++ +F+KVDVNGDN +P++K+LK +GG
Sbjct: 135 EILAFPCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDNTAPIYKFLKSSKGGL 194
Query: 467 LGSFIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 583
G IKWNF+KF+++K+G VER+ P T PL + K ++K
Sbjct: 195 FGDNIKWNFSKFLVDKEGRVVERYAPTTSPLSMEKDIKK 233
>03_03_0010 +
13712339-13712392,13712506-13712582,13712715-13712776,
13713231-13713349,13714928-13715095,13715183-13715212
Length = 169
Score = 174 bits (423), Expect = 6e-44
Identities = 85/160 (53%), Positives = 115/160 (71%), Gaps = 5/160 (3%)
Frame = +2
Query: 116 TSIHEFTVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 295
TSIHEFTVK+ G++V L++YKG V I+VNVAS+CG T NY QL ELY+++ K I
Sbjct: 10 TSIHEFTVKDCNGKEVSLEMYKGKVLIVVNVASKCGFTETNYTQLTELYQKH-RDKDFEI 68
Query: 296 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLG 472
LAFPCNQF QEPG+ ++I FA R K ++ +F+KV VNG +A+PL+K+LK + G G
Sbjct: 69 LAFPCNQFLRQEPGSDQQIKDFACTRFKAEYPVFQKVRVNGPDAAPLYKFLKASKPGLFG 128
Query: 473 SFIKWNFTKFIINKDGVPVERHGPNTDPL----DLVKSLE 580
S IKWNFTKF+I+K+G + R+ T PL D++K+LE
Sbjct: 129 SRIKWNFTKFLIDKNGKVINRYSTATSPLSFEKDILKALE 168
>06_01_0600 +
4332886-4332896,4332968-4333067,4333588-4333664,
4333774-4333835,4334016-4334134,4334237-4334404,
4335004-4335123
Length = 218
Score = 164 bits (399), Expect = 5e-41
Identities = 75/143 (52%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Frame = +2
Query: 140 KNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAFPCNQF 319
++I G+DV L +KG +IVNVASQCGLT NY +L+ LYE+Y +++G ILAFPCNQF
Sbjct: 37 QDIDGKDVALSKFKGRALLIVNVASQCGLTTANYTELSHLYEKY-KTQGFEILAFPCNQF 95
Query: 320 AGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIKWNFT 496
QEPG+ +I FA R K +F +F+KVDVNG N +P++K+LK GG LG +KWNF
Sbjct: 96 GAQEPGSNPQIKQFACTRFKAEFPIFDKVDVNGPNTAPIYKFLKSSAGGFLGDLVKWNFE 155
Query: 497 KFIINKDGVPVERHGPNTDPLDL 565
KF+++K G VER+ P T P +
Sbjct: 156 KFLVDKTGKVVERYPPTTSPFQI 178
>04_04_1636 + 34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/58 (58%), Positives = 43/58 (74%)
Frame = +2
Query: 107 KAATSIHEFTVKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGES 280
K A SIHEFTVK+ +G DV+L YKG V +IVN AS+CGLT NY +L +LY +Y E+
Sbjct: 913 KLAGSIHEFTVKDARGSDVELSRYKGKVVLIVNAASRCGLTNYNYTELGQLYGKYKET 970
>06_03_0385 - 20234160-20234798,20234888-20235238
Length = 329
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 53 CLSRAQLSTVRMTSNPDYKAATSIHEFTVKNIKGEDV 163
C+ + + VR+ S D + + +FT KNIK EDV
Sbjct: 235 CVLKKSTNGVRIKSYEDAASVLTTSKFTYKNIKMEDV 271
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -2
Query: 532 FNWNSILVYDELGKVPLDEATKGASLLMLQILPQWTGIVSIDINFLKQ 389
F +++ + + LG+ PL G++L + + W G ++I I+ L +
Sbjct: 383 FEEHAVKITERLGRSPLAAKVVGSNLKRVMNIDDWKGALTIKIDNLSE 430
>12_02_0161 +
14659338-14659467,14659553-14659888,14660034-14660266,
14660344-14660805,14660887-14661719,14661802-14661972,
14662052-14662352
Length = 821
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 454 LMLQILPQWTGIVSIDINFLKQIEFDFTLRGKANYLFW 341
++L I+P+WT + ++ N K ++DFT KA + W
Sbjct: 726 ILLVIVPKWTRVTYLNSN--KSKDYDFTEITKALNMAW 761
>01_01_0862 +
6714041-6714358,6714462-6714603,6715511-6715735,
6715769-6716763,6717327-6717381,6717469-6717621,
6718130-6718299,6718388-6718870
Length = 846
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 311 NQFAGQEPGNPEEIVCFASERKVKFDLFEKVDVNGD 418
++FA +E G+PEEI+ F ++ + + E +N +
Sbjct: 666 SEFADEEEGSPEEILAFCRAKR-RLERLEPAQLNAE 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,990
Number of Sequences: 37544
Number of extensions: 336412
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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