Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d07
         (271 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000382D55 Cluster: COG3402: Uncharacterized conserv...    31   5.0  
UniRef50_Q95KD3 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  

>UniRef50_UPI0000382D55 Cluster: COG3402: Uncharacterized conserved
           protein; n=1; Magnetospirillum magnetotacticum MS-1|Rep:
           COG3402: Uncharacterized conserved protein -
           Magnetospirillum magnetotacticum MS-1
          Length = 162

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -3

Query: 245 DPASPRGDW---RPPRGDARGPRLPRAVR 168
           D  S  G+W    PPRG  RGPR+PRA R
Sbjct: 135 DDGSDDGEWPPNEPPRG-RRGPRIPRAER 162


>UniRef50_Q95KD3 Cluster: Putative uncharacterized protein; n=1;
           Macaca fascicularis|Rep: Putative uncharacterized
           protein - Macaca fascicularis (Crab eating macaque)
           (Cynomolgus monkey)
          Length = 141

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 242 PASPRGDWRPPRGDARGPRLP 180
           P  PR  WRPPR     PRLP
Sbjct: 113 PPPPRRTWRPPRASRPMPRLP 133


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.315    0.129    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,485,184
Number of Sequences: 1657284
Number of extensions: 1573742
Number of successful extensions: 6812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6805
length of database: 575,637,011
effective HSP length: 67
effective length of database: 464,598,983
effective search space used: 10221177626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)