Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d07
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0730 + 10784784-10785341                                         28   0.89 
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720...    27   2.1  
08_02_1326 - 26158279-26159712                                         27   2.7  
06_01_0207 + 1579343-1579529,1579610-1579659,1579896-1580092,158...    27   2.7  
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    26   3.6  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    26   3.6  
11_06_0172 - 20877029-20878049,20880129-20880400                       26   4.7  
04_03_0228 + 13004688-13005044                                         26   4.7  
08_01_0554 - 4851698-4851943,4852041-4852760                           25   6.3  
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657...    25   6.3  
10_07_0076 - 12635577-12635693,12635814-12635989,12636358-126364...    25   8.3  
08_02_1314 + 26079390-26080181                                         25   8.3  
01_01_0327 + 2659822-2660232,2660906-2660959                           25   8.3  

>03_02_0730 + 10784784-10785341
          Length = 185

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 236 SPRGDWRPPRGDARGPR 186
           SP   W+P  GD RGPR
Sbjct: 41  SPPATWQPGEGDVRGPR 57


>06_03_0526 +
           21771519-21771607,21771685-21771810,21771890-21772010,
           21772123-21772851,21772954-21773349,21774594-21774665,
           21774741-21774803,21775236-21775337
          Length = 565

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 242 PASPRGDWRPPRGDARGPRLPR 177
           PA P   WRPPR  AR    PR
Sbjct: 230 PAPPPPLWRPPRRRARSSSSPR 251


>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 AGDSTGSKTDSARQPGPARI 203
           AG+STG+K+   R P P R+
Sbjct: 361 AGESTGTKSGKKRGPAPLRV 380


>06_01_0207 +
           1579343-1579529,1579610-1579659,1579896-1580092,
           1580343-1580469,1580562-1580693
          Length = 230

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 123 GGDSGTLAGDSTGSKTDSARQPGPAR 200
           GG+ G +AGDS+G + +S      AR
Sbjct: 51  GGEKGAVAGDSSGKQGESDAAKNKAR 76


>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 132 SGTLAGDSTGSKTDSARQPGP 194
           S T  GD+TG+  D+ RQP P
Sbjct: 730 SFTREGDATGTHADAQRQPWP 750


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 248 RDPASPRG---DWRPPRGDARGPRLPR 177
           RD  SPRG   D R PRG  R  R P+
Sbjct: 184 RDSRSPRGSPRDSRSPRGSPRDSRSPK 210



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 248 RDPASPRG---DWRPPRGDARGPRLPR 177
           RD  SP+G   D + PRG  R  R PR
Sbjct: 204 RDSRSPKGSPRDTQSPRGSPRDSRSPR 230


>11_06_0172 - 20877029-20878049,20880129-20880400
          Length = 430

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 221 WRPPRGDARG 192
           WRPP+GD RG
Sbjct: 296 WRPPQGDGRG 305


>04_03_0228 + 13004688-13005044
          Length = 118

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 205 PRGGRQSPRGDAG 243
           P GGR+SP GDAG
Sbjct: 86  PDGGRRSPPGDAG 98


>08_01_0554 - 4851698-4851943,4852041-4852760
          Length = 321

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 132 SGTLAGDSTGSKTDSARQPGPA 197
           +G +A D  G++TD A +P P+
Sbjct: 213 AGLVAADEHGARTDKALRPAPS 234


>01_05_0008 -
           17063377-17063813,17064937-17065052,17065284-17065728,
           17066421-17066760
          Length = 445

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 239 ASPRGDWRPPRGDARGPRLPRA 174
           A PR D  PPR DAR   LP A
Sbjct: 79  ARPRADCPPPRLDARFLALPDA 100


>10_07_0076 -
           12635577-12635693,12635814-12635989,12636358-12636493,
           12636714-12636929,12637021-12637134,12637456-12637559,
           12638417-12638687
          Length = 377

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 242 PASPRGDWRP 213
           P SP GDWRP
Sbjct: 221 PMSPNGDWRP 230


>08_02_1314 + 26079390-26080181
          Length = 263

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 141 LAGDSTGSKTDSARQPGPARIASG 212
           LAG    + T  A +P PA +A G
Sbjct: 193 LAGSKAATATSPASEPAPAPVAGG 216


>01_01_0327 + 2659822-2660232,2660906-2660959
          Length = 154

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 251 GRDPASPRGDWRPPRGDARGPRLP 180
           GR  AS RGD  PP    R P LP
Sbjct: 98  GRSSASARGDDAPPFHLPRRPPLP 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,589,570
Number of Sequences: 37544
Number of extensions: 48031
Number of successful extensions: 263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)