Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d07
         (271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical ...    26   4.2  
U80027-13|AAC48130.2|  200|Caenorhabditis elegans Hypothetical p...    25   7.3  

>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 138  TLAGDSTGSKTDSARQPGPARIASG 212
            T+AGD++   T +ARQP  A+ +SG
Sbjct: 1261 TMAGDTSAQATTTARQPLTAQQSSG 1285


>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 202 SPRGGRQSPRGDAG 243
           SPRGGR SPRG  G
Sbjct: 93  SPRGGRGSPRGGRG 106


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 248 RDPASPRGDWRPPRGDARG 192
           R P+ PRGD+R  R  +RG
Sbjct: 275 RSPSRPRGDFRRDRSQSRG 293


>AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical
           protein C17B7.9 protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 17  NELSCCVAVRVLSTN*LSTPRYLRVGVHTRSRD 115
           N LSC   ++ L TN    P    +G H R+ D
Sbjct: 73  NVLSCYNKIKCLGTNGEKIPAIKNIGKHCRATD 105


>U80027-13|AAC48130.2|  200|Caenorhabditis elegans Hypothetical
           protein T28A11.18 protein.
          Length = 200

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 17  NELSCCVAVRVLSTN*LSTPRYLRVGVHTRSRD 115
           N LSC   ++ L TN    P    +G H R+ D
Sbjct: 73  NVLSCYNKIKCLGTNGEKIPAVKYIGKHCRATD 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.129    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,458,159
Number of Sequences: 27780
Number of extensions: 32723
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)