Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d04
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   4.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 245 SQVQQDGGEHQRWRQNHPQSWYRRSQRL 162
           S V  D G   + +  H   W+RR  RL
Sbjct: 2   SGVVGDAGRASKGQDKHMVHWFRRGLRL 29


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 354 SSPSLLAQLTSSPEAPGSPPP 416
           SSP L  +++ SP  P +P P
Sbjct: 83  SSPILAEKVSVSPTTPPTPSP 103


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 422 HMHGSYNMNNLHNDVAVINHNH 487
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 422 HMHGSYNMNNLHNDVAVINHNH 487
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 354  SSPSLLAQLTSSPEAPGSPP 413
            S PS    + ++ E PG PP
Sbjct: 980  SEPSETVTIITAEEVPGGPP 999


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 422 HMHGSYNMNNLHNDVAVINHNH 487
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 422 HMHGSYNMNNLHNDVAVINHNH 487
           H H +YN N L N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,032
Number of Sequences: 336
Number of extensions: 2403
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)