Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d03
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...   166   2e-42
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    31   0.11 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.46 
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   3.3  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   5.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   9.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.9  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score =  166 bits (404), Expect = 2e-42
 Identities = 90/198 (45%), Positives = 126/198 (63%), Gaps = 8/198 (4%)
 Frame = +2

Query: 101 MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLIL-SSQKKIELIQVQDSQVMIRARLL 277
           M +LLLDP +R WV LPI+ +  L+GI+RH  +++L SS KK+   ++++ +++ RA  L
Sbjct: 1   MQKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYAL 60

Query: 278 RE-NGKYLPRQSFAMRRHWFNNEETG-YFK-VQKRAAASQNPMTDP----GMMTDMLKGN 436
           R  +   LP    A +     + ++G Y K V   A  + NP+ D     G+M  M KGN
Sbjct: 61  RACSNSLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAANPLMDDKTLEGLMESM-KGN 119

Query: 437 LTNVLPMIVIGGWINWMFSGFLTTKVPFPLTLRFKPMLQRGVELAYLDASWVSSASWYFL 616
           +  V+P  +I  WIN  FSGF+  K+PFPLTLRFK + Q GV    LD  WVSS SWYFL
Sbjct: 120 MLMVVPQTIIMTWINEFFSGFILLKLPFPLTLRFKSIFQSGVATQDLDVQWVSSISWYFL 179

Query: 617 NVFGLRTIYALVLGENNA 670
           N+FGL+++YAL+LGENNA
Sbjct: 180 NLFGLKSVYALLLGENNA 197


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 402 SVIGFCEAAALFCTLK*PVSSLLNQWRRIANDCLGRYFPFSRSNLARII 256
           SV+GFCE A        P S  +  W  +    LG  F ++ + L +II
Sbjct: 283 SVVGFCEGAVAGLVAITPGSGFVPPWAAVVIGALGAVFCYAATYLKKII 331


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +2

Query: 50   IKSITYDISEI*NLLSQMPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKK 223
            + + T DI ++  LLS++P  LLD  + F V+L  V  T +  IV+  ++ ILS QKK
Sbjct: 1156 VNTNTADIDDLYRLLSKIPTNLLDLPM-FQVYLGCV-DTLIQTIVKQ-IAQILSKQKK 1210


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 137 WVFLPIV-IITFLVGIVRHYVS 199
           W+ LPI  I+  LVGI++HY++
Sbjct: 460 WIDLPIAFILGCLVGILQHYIA 481


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 514 YFGCKKTTEHPVNPSSDDNHRQDIC 440
           Y G  K T H  NP S D   Q+ C
Sbjct: 124 YLGGDKCTVHVTNPCSPDEKNQNDC 148


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 34  IHILKNKINYLRHK*NIESAKPNARVTFRSKYPILGVST 150
           +H+ K K+N    + ++  AK +A +T   K P++   T
Sbjct: 480 LHLAKMKLNNKNDESSLSPAKSHAVITQAPKIPLISTFT 518


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 374 AAASQNPMTDPGMMTDMLKGNLTNVLPMIVIGGWINWMFSGFLTTKVPF 520
           A+    PMT PG++ D+  G   +    +V  G ++   S F  T+  F
Sbjct: 628 ASVLAKPMTPPGLIGDISCGTTISNFTDLVFYGHVDGKISIFSKTQYRF 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,175
Number of Sequences: 5004
Number of extensions: 58601
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)