Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d03
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0610 + 18944084-18944244,18944471-18944564,18944809-189449...   182   3e-46
01_05_0325 + 20948196-20948346,20949017-20949102,20949389-20949406     30   1.9  
03_05_0946 - 29075600-29076229                                         29   4.5  

>09_04_0610 +
           18944084-18944244,18944471-18944564,18944809-18944928,
           18945012-18945060,18945985-18946084,18946196-18946257,
           18946365-18946426,18947080-18947187
          Length = 251

 Score =  182 bits (442), Expect = 3e-46
 Identities = 85/193 (44%), Positives = 131/193 (67%), Gaps = 5/193 (2%)
 Frame = +2

Query: 107 ELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLIL---SSQKKIELIQVQDSQVMIRARLL 277
           EL+LD  IR WV +P+ ++  L+G++R++V+ ++   S+    +   V++ QV+IRAR L
Sbjct: 4   ELVLDTAIRDWVLVPLSVVMVLIGVLRYFVAKLMRSPSASPSPDPKLVKEGQVVIRARNL 63

Query: 278 RENGKYLPRQSFAMRRHWFNNEETGYFKVQKRAA--ASQNPMTDPGMMTDMLKGNLTNVL 451
           R N +Y+P ++F  R+ ++ NEE G   V K  A  A     +DP M  DM+K NL+ ++
Sbjct: 64  RINSQYIPAKAFKSRKVYYTNEENGLLHVPKEEAQKAQAAMFSDPNMAMDMMKKNLSMIV 123

Query: 452 PMIVIGGWINWMFSGFLTTKVPFPLTLRFKPMLQRGVELAYLDASWVSSASWYFLNVFGL 631
           P  +   W+N+ FSGF+  K+PFPLT RF+ MLQ G++L+ +D S+VSS SWYFLN+FGL
Sbjct: 124 PQTLTFAWVNFFFSGFVAAKIPFPLTPRFRGMLQNGIDLSTVDVSYVSSRSWYFLNLFGL 183

Query: 632 RTIYALVLGENNA 670
           R +++L+LGE NA
Sbjct: 184 RGLFSLILGEENA 196


>01_05_0325 + 20948196-20948346,20949017-20949102,20949389-20949406
          Length = 84

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 470 GWINWMFSG----FLTTKVPFPLTLRFKPMLQRGVELAYLDASWVSSASWYFLN 619
           G I WM  G     + T VPF +T  F P++   V L  ++     S +WY  N
Sbjct: 22  GSIFWMSVGPAYVRVLTNVPFSMTSSFSPVVYNLVPLKQVNLHLPESENWYLQN 75


>03_05_0946 - 29075600-29076229
          Length = 209

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = +2

Query: 425 LKGNLTNVLPMIVIGGWINWMFSGFLTTKVPFPLTLRFKPMLQRGVELAYLDASWVSSAS 604
           LK        + V+ G +N +F G    K+PF      + M  RGV     D +  S   
Sbjct: 111 LKSGAVVAAVLFVVFGLLNSLFEGRAVAKLPFAPVPLVQRMSHRGV--PGNDPTDCSMVF 168

Query: 605 WYFLNVFGLRTIYALVLG 658
            YFL    +RT    +LG
Sbjct: 169 LYFLCSISIRTNLQKLLG 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,654
Number of Sequences: 37544
Number of extensions: 345418
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)