Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5d02
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.59 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.2  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 248 CGRSLRGCGRRVLSQRSLPESHRQPYRCTDRVF 150
           C R LR  GR+ +     PE+    Y  +DR++
Sbjct: 403 CLRELRNLGRKTIMVNYNPETVSTDYDMSDRLY 435


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 332 APGDQ-MPDLDVPVPEK-TPP-PSEAPRDSPSPTEPPKLN 442
           APG Q  P      P++ +PP PS+ P     P  PP  N
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 262 LAGNTVAVHFEDAVA 218
           L G TVAV+F D +A
Sbjct: 938 LVGKTVAVNFRDVIA 952


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = -2

Query: 256 GNTVAVHFEDAVAAF*ASGLCRRAIVNLTDVLTGFSFFCVQIKPVAVEVWRLPHVAES 83
           G  + V F   +A+  A+ +   A++ +  VLT        I  +    W L  +  S
Sbjct: 422 GEVITVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 126 GLICTQKKENPVSTSVRLT 182
           G IC ++KEN +   + +T
Sbjct: 512 GQICLKEKENEIDFKIEVT 530


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 196 RDRWLKTRRPHPRSERPQ 249
           R  + K +R HPR +RP+
Sbjct: 146 RINFTKLKRHHPRYKRPR 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,777
Number of Sequences: 438
Number of extensions: 4231
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)