Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c24
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 27 2.4
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 3.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.2
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 25 7.3
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 7.3
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 9.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.6
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 25 9.6
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 9.6
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 510 RIGPCCLCISSRSQDTGYPGTPIRCSQP 427
R+ PC C+ S SQ YP PIR P
Sbjct: 31 RLHPCFQCVKSNSQ-CFYPEDPIRRRAP 57
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 438 IESACQDIQYPAIAKICKDNTAQFENYIHHVLK 536
I++AC Q+ + +IC+DN + ++LK
Sbjct: 729 IQAACLMNQFTEVERICRDNNVYNPEKVKNLLK 761
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 339 PAFVSPTQSPYSVQPRRIQPP 277
P P QSP VQP QPP
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPP 1051
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 107 WLSKY*NLNNSVLILLRID*YQNVKSPLSVTKFT 6
W + ++N S ++++D Y N+KS LS K T
Sbjct: 386 WNWELGSVNESEYTVVKVDFYNNIKSYLSEVKNT 419
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 308 YGDCVGETKAGCF*QRNIIEIRETIPRTQRC*RPY**GISGCEHRIGV-PGYPVSCDRED 484
+ C+G F ++ +EIR+ P T+ C + G EH I + P DR +
Sbjct: 239 FNKCLGNMLLYRFERQQYLEIRQQYPDTEMC------DLYGVEHLIRLFVSLPELIDRTN 292
Query: 485 MQRQ 496
M Q
Sbjct: 293 MDSQ 296
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 315 TVWEKQKPDVSDNEISSKFVKLF 383
T+ EKQ D++DN+ +K + LF
Sbjct: 1011 TIEEKQDNDITDNQDDNKELNLF 1033
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 303 HCTATVWEKQKPDVSDNEISSKFVKLFRGLKDVKDLINEEY 425
H T + ++ KPD+ I S+++ ++ +++LIN Y
Sbjct: 356 HITKLIEQQIKPDLESMLIISEYLNEYKPSPKMRELINWLY 396
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 286 NAARLDTVRRLCGRNKSRMFLTTKYHRNS*NYSEDSKMLKTL 411
N +L +R+LC R+ L + R Y + K KTL
Sbjct: 363 NLDKLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKTL 404
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 71 EQSYLNFSIWRAKIKAGVLNLNYIRNDD 154
E S +FS+ K + L LN ++NDD
Sbjct: 305 ESSSSHFSVVAMKRRKNYLGLNVVQNDD 332
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 342 HPAFVSPTQSPYSVQPRRI 286
HP + P +SPY+V P ++
Sbjct: 958 HPGDLDPDRSPYNVVPLKV 976
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,197
Number of Sequences: 5004
Number of extensions: 44283
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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