Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c18
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    27   1.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   4.1  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   4.1  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   5.4  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   5.4  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   7.2  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   9.5  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 447 SKQIKRMISSYVGENAEFERQFLSGELE 530
           S++I  MIS+ VG NAE +   L+ EL+
Sbjct: 137 SEEISTMISTPVGLNAEIDEDELANELD 164


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +3

Query: 270  AQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKS 449
            A   +   + G+KL+VGG G  G    L     I  V +  V     GV   G  I+  +
Sbjct: 1208 ADNFLHAANKGAKLVVGGVGAAG-GLALAGVTTIGSVGSKAVTGVADGVTGTGKHIISGA 1266

Query: 450  KQIKRM 467
            K I +M
Sbjct: 1267 KGISKM 1272


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 372 KKVSALTVVSNNAGVEDFGLG 434
           K  S L+  + NAGV DFGLG
Sbjct: 764 KSQSMLSANNLNAGVNDFGLG 784


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 330 LCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAE 497
           L  + EN+  + + +  ++L  V+N+    D GLG  L +  I + I++ V  N +
Sbjct: 342 LSDVDENISTSSSPRSPASLAPVNNSERSYDSGLGESLNNMHIGKSIATAVPVNTK 397


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 17  CEVINNRTQFSCLS*KFFDFVKKQNXXXXXXXXXXXXXXTFIYHDS---KYKKTIRCQLF 187
           CE  N+ T+  C S    D +++++              +F+  DS   K KKT   + F
Sbjct: 190 CESANS-TENVCFSVSTVDEIQQRHPSAGHSIDSTCQSNSFLEGDSATHKKKKTDNIKEF 248

Query: 188 KACEFHWKDKKL 223
            +CEF+ + + L
Sbjct: 249 TSCEFNDRSRTL 260


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 137 FIYHDSKYKKTIRCQLFKACEFHWKDKKLCDLC 235
           ++ H SK +   R +LF+    H K+ + C++C
Sbjct: 227 YVEHQSKKR---RLELFQLTNNHQKNSEACEMC 256


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 30  IIERNSLV*AKSSLTSSRNRTVWS*FCCHCEVPVSLSFIMTLNIRKLL 173
           +IE N L    S L  +    +WS    +C +P+ L    TL    +L
Sbjct: 495 VIEMNDLDSIPSKLLQTLVDQIWSLLPGYCYLPLDLQSSFTLEFASIL 542


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 260 YFAFTNNCGISRTTFYLSNGIHKL*IIG 177
           +F F N+ GIS +  Y+   IH + + G
Sbjct: 556 FFVFCNSFGISSSKLYIKKMIHLIWVKG 583


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 489 FLQHMRRSSFLSVYF*EEYPSQNLQHQHC 403
           F+QH+  S  LS +  + YP ++    HC
Sbjct: 408 FIQHITLSRILSHFVRKVYPVKSPSDSHC 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,442
Number of Sequences: 5004
Number of extensions: 35393
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)