Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c18
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816...    29   2.4  
06_03_0778 - 24523780-24526353                                         28   4.1  
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    28   5.5  
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618...    28   5.5  
07_03_0758 - 21292205-21293329                                         28   5.5  
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201...    27   9.6  

>03_02_0787 +
           11180794-11180958,11181051-11181230,11181396-11181611,
           11181693-11181875,11182013-11182234,11182434-11182550,
           11182682-11182825,11183198-11183299,11183762-11183830,
           11184283-11184516
          Length = 543

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 336 GIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEF 500
           GIPE   K   + +  A+T  S    +ED  L    +S  +K    SY+GE AEF
Sbjct: 472 GIPEPYEKLKEMTRGQAVTKDSIRQFIEDLDLPEAARSSLLKLTPHSYIGE-AEF 525


>06_03_0778 - 24523780-24526353
          Length = 857

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 366 NIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEVE 536
           +IK  + L    NN  + DFG+  LL  +Q+   +++  G       ++L G+  ++
Sbjct: 654 DIKPDNILLDDKNNPKIADFGISRLLGDEQLHTTVTNVRGTRGYIAPEWLHGDRRID 710


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 366 NIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEV 533
           N+K  + L   +  A V DFGL +LL        +  Y+    E + + LS E +V
Sbjct: 623 NVKSTNVLLDKNGVACVADFGLALLLSPAHAIARLGGYIAPEQE-DNKRLSQEADV 677


>11_06_0390 -
           23060034-23060399,23060486-23060573,23061767-23061843,
           23062971-23063057
          Length = 205

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 144 IMTLNIRKLLDANYSKLV-----NSIGKIKSCATYATIIRKSKIYASA 272
           I T  I+K LD N   ++      ++GK+  CA Y   ++K+ +Y +A
Sbjct: 22  ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAA 69


>07_03_0758 - 21292205-21293329
          Length = 374

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 376 FFILRALIRFSGIPQSPKPP 317
           FF  R L++ SG+P SP PP
Sbjct: 277 FFSGRPLLQLSGLPPSPPPP 296


>02_01_0301 +
           2011707-2015423,2016982-2017182,2017670-2017786,
           2018030-2018122
          Length = 1375

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 117 CEVPVSLSFIMTLNIRKLLDANYSKLVNSIGKIKSCATYATIIRKSKIYASAQEVVQDVS 296
           C+ P+S  FI  L+    L  + +K++N + ++KS      I+ K+K +     V   VS
Sbjct: 114 CQGPISNPFIWVLSNISSLSPHNTKMLNHLKEVKS------ILEKAKNFLGVLSVATQVS 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,822
Number of Sequences: 37544
Number of extensions: 182540
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)