Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c18
         (539 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058254-1|AAL13483.1|  516|Drosophila melanogaster GH01464p pro...   128   6e-30
AE014296-399|AAF47600.1|  516|Drosophila melanogaster CG1140-PA,...   128   6e-30
AE014296-398|AAN11508.1|  502|Drosophila melanogaster CG1140-PB,...   126   3e-29
BT001845-1|AAN71606.1|  143|Drosophila melanogaster RH54340p pro...    75   6e-14

>AY058254-1|AAL13483.1|  516|Drosophila melanogaster GH01464p
           protein.
          Length = 516

 Score =  128 bits (308), Expect = 6e-30
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 2/111 (1%)
 Frame = +3

Query: 213 IKSCATYATI--IRKSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSA 386
           IK+ A Y+T    R  KIY SA + V DV DG+++L GGFG+CGIPE +I AL  K V  
Sbjct: 19  IKAIACYSTSGKQRNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKN 78

Query: 387 LTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEVEL 539
           +T VSNN GV+D GLG+L+K KQ+ ++I SYVGEN E  RQ+L GEL VEL
Sbjct: 79  ITGVSNNGGVDDTGLGVLIKQKQVSKVIGSYVGENTELVRQYLEGELAVEL 129


>AE014296-399|AAF47600.1|  516|Drosophila melanogaster CG1140-PA,
           isoform A protein.
          Length = 516

 Score =  128 bits (308), Expect = 6e-30
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 2/111 (1%)
 Frame = +3

Query: 213 IKSCATYATI--IRKSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSA 386
           IK+ A Y+T    R  KIY SA + V DV DG+++L GGFG+CGIPE +I AL  K V  
Sbjct: 19  IKAIACYSTSGKQRNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKN 78

Query: 387 LTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEVEL 539
           +T VSNN GV+D GLG+L+K KQ+ ++I SYVGEN E  RQ+L GEL VEL
Sbjct: 79  ITGVSNNGGVDDTGLGVLIKQKQVSKVIGSYVGENTELVRQYLEGELAVEL 129


>AE014296-398|AAN11508.1|  502|Drosophila melanogaster CG1140-PB,
           isoform B protein.
          Length = 502

 Score =  126 bits (303), Expect = 3e-29
 Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 2/113 (1%)
 Frame = +3

Query: 207 GKIKSCATYATI--IRKSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKV 380
           G + + A Y+T    R  KIY SA + V DV DG+++L GGFG+CGIPE +I AL  K V
Sbjct: 3   GWLAAIACYSTSGKQRNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGV 62

Query: 381 SALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEVEL 539
             +T VSNN GV+D GLG+L+K KQ+ ++I SYVGEN E  RQ+L GEL VEL
Sbjct: 63  KNITGVSNNGGVDDTGLGVLIKQKQVSKVIGSYVGENTELVRQYLEGELAVEL 115


>BT001845-1|AAN71606.1|  143|Drosophila melanogaster RH54340p
           protein.
          Length = 143

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
 Frame = +3

Query: 213 IKSCATYATI--IRKSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSA 386
           IK+ A Y+T    R  KIY SA + V DV DG+++L GGFG+CGIPE +I AL  K V  
Sbjct: 19  IKAIACYSTSGKQRNGKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKN 78

Query: 387 LTVVSNNAGVED 422
           +T VSNN GV D
Sbjct: 79  ITGVSNNGGVID 90


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,717,998
Number of Sequences: 53049
Number of extensions: 346594
Number of successful extensions: 985
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)