Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c16
         (470 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EK22 Cluster: Putative uncharacterized protein; n=1; ...    32   5.5  
UniRef50_UPI0000DA3D65 Cluster: PREDICTED: similar to mcf.2 tran...    32   7.3  
UniRef50_Q16L91 Cluster: Predicted protein; n=1; Aedes aegypti|R...    31   9.7  

>UniRef50_A2EK22 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 438

 Score = 32.3 bits (70), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 23  VRPTSINLAYLTNXFCFLCATEDFQNENHLLRFTNKR 133
           ++ T I L Y  +  C LCAT+ F  + H   FT+K+
Sbjct: 125 IKNTGIKLRYALSLNCILCATQ-FSPDGHYFAFTDKK 160


>UniRef50_UPI0000DA3D65 Cluster: PREDICTED: similar to mcf.2
           transforming; n=1; Rattus norvegicus|Rep: PREDICTED:
           similar to mcf.2 transforming - Rattus norvegicus
          Length = 600

 Score = 31.9 bits (69), Expect = 7.3
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +3

Query: 39  LIWRI*RTXFAFYVLLKTSKMKTIYFVLLISVCAVSAIYLPDDSISADLDKYKSESFGSK 218
           LIWR   +  AF+  LK   ++     L I  C    +    DS++  L++ +SE FGS 
Sbjct: 438 LIWRK-YSECAFFQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGST 496

Query: 219 LYSE 230
           LY +
Sbjct: 497 LYDQ 500


>UniRef50_Q16L91 Cluster: Predicted protein; n=1; Aedes aegypti|Rep:
           Predicted protein - Aedes aegypti (Yellowfever mosquito)
          Length = 447

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 117 VLLISVCAVSAIYLPDDSISADLDKYKSESFGSKLYSESXSY 242
           VLL++VC VS++++P+D     ++ Y  ES G+++  E   Y
Sbjct: 14  VLLLTVCVVSSMHIPED--MEIMEGYDLESAGTEINPEDDFY 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,205,246
Number of Sequences: 1657284
Number of extensions: 2411817
Number of successful extensions: 5945
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5945
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)