Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c13
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    28   1.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   3.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.8  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   4.8  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   4.8  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   8.5  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 424 TALILG*NFAGLLLKSSLFNISGG*R 347
           T L+L    AG  +++SLFN+ GG R
Sbjct: 19  TGLLLALGLAGFAVQTSLFNVDGGHR 44


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 342 RRVSLPHFRSFPCPFCGFFLIYLSIQTDISILYLPIPILFNY 217
           RR+  PHF  F   +  FF I L I T I + Y    I +N+
Sbjct: 33  RRIFRPHFSQFWTIWMKFFSIALVIITQIYVGYKTKNIGWNF 74


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 127 CVVSVTHVFASRAKRFQL 74
           CV+S+ +VFAS +K F+L
Sbjct: 453 CVLSLQNVFASNSKEFKL 470


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 357 PEILKRLDFSKSPAKFHPKISAVDP 431
           P +L  LDF  S  + HP + ++DP
Sbjct: 364 PSLLAALDFRSSNEEQHPGLRSLDP 388


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 474 YDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGRLL 584
           Y K FL+L S +    N +R +Y  RF+ +++S  LL
Sbjct: 48  YSKDFLELFSTMVISTNFSRNRY--RFSYVENSCTLL 82


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 27/123 (21%), Positives = 49/123 (39%)
 Frame = +3

Query: 225 IESVSASIK*KCLFEYSNKLKKNHKMGMEKNGNAEGKLSEYLYPPEILKRLDFSKSPAKF 404
           I + SAS     LF+  +K  K+H +  E N          LY   +++        A  
Sbjct: 41  IRAKSASSCSDLLFKSFSKFNKHHPLNEESNDLPSDAAIHQLYESYLME--------ASL 92

Query: 405 HPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGRLL 584
           H K+     GE   I+     +++ K + + + ++ S   +    Y+ RF+ +      L
Sbjct: 93  HKKL-----GEQLNILVINPFANWSKKYSRRVDEIVSAAIVKINNYNSRFSHVNSKKSNL 147

Query: 585 CDR 593
            DR
Sbjct: 148 TDR 150


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 ETTQAARSSPLPLVTFTLP 173
           E TQ   +SP PLVT +LP
Sbjct: 416 EKTQPTNASPAPLVTPSLP 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,351
Number of Sequences: 5004
Number of extensions: 46624
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)