Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c13
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250     33   0.13 
02_05_0531 + 29811356-29811856                                         33   0.17 
07_01_0086 + 672173-673603                                             28   6.6  

>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
          Length = 231

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 450 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSG 575
           +RPL+ +D  +GFL LL+QL+    +T + +  RF ++   G
Sbjct: 24  IRPLELADISRGFLGLLNQLSPSPPLTEEAFRARFEELAALG 65


>02_05_0531 + 29811356-29811856
          Length = 166

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 450 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSG 575
           +R L+ +D++KGF+ LLSQL++  ++T  ++   F  +   G
Sbjct: 23  IRRLEATDHEKGFVALLSQLSACPDLTASEFAACFADLAALG 64


>07_01_0086 + 672173-673603
          Length = 476

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 NAEGKLSEYLYPPEILKRLDFSKSPAK 401
           N  G L E+++PPE+   L F   PAK
Sbjct: 313 NRVGPLYEHVFPPELAPSLSFVGIPAK 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,588
Number of Sequences: 37544
Number of extensions: 283541
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)