Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c13
         (599 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012179-1|AAH12179.1|  184|Homo sapiens glucosamine-phosphate N...    65   2e-10
AK090577-1|BAC03482.1|  184|Homo sapiens protein ( Homo sapiens ...    65   2e-10
BC007504-1|AAH07504.1|  712|Homo sapiens leucine-rich repeats an...    31   2.3  
AK024961-1|BAB15044.1|  501|Homo sapiens protein ( Homo sapiens ...    30   5.4  

>BC012179-1|AAH12179.1|  184|Homo sapiens glucosamine-phosphate
           N-acetyltransferase 1 protein.
          Length = 184

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 30/76 (39%), Positives = 49/76 (64%)
 Frame = +3

Query: 348 LYPPEILKRLDFSKSPAKFHPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNI 527
           ++ P +LK +D+S++ A F P IS   PGE  +++RPL  +D ++GF ++L QLT  G +
Sbjct: 8   MFDPSLLKEVDWSQNTATFSPAISPTHPGEG-LVLRPLCTADLNRGFFKVLGQLTETGVV 66

Query: 528 TRKQYDDRFTKMKHSG 575
           + +Q+   F  MK SG
Sbjct: 67  SPEQFMKSFEHMKKSG 82


>AK090577-1|BAC03482.1|  184|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33258 fis, clone ASTRO2005687, highly similar to
           Mus musculus mRNA for EMeg32 protein. ).
          Length = 184

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 30/76 (39%), Positives = 49/76 (64%)
 Frame = +3

Query: 348 LYPPEILKRLDFSKSPAKFHPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNI 527
           ++ P +LK +D+S++ A F P IS   PGE  +++RPL  +D ++GF ++L QLT  G +
Sbjct: 8   MFDPSLLKEVDWSQNTATFSPAISPTHPGEG-LVLRPLCTADLNRGFFKVLGQLTETGVV 66

Query: 528 TRKQYDDRFTKMKHSG 575
           + +Q+   F  MK SG
Sbjct: 67  SPEQFMKSFEHMKKSG 82


>BC007504-1|AAH07504.1|  712|Homo sapiens leucine-rich repeats and
           calponin homology (CH) domain containing 3 protein.
          Length = 712

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 23/65 (35%), Positives = 28/65 (43%)
 Frame = +3

Query: 384 SKSPAKFHPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKM 563
           S+SP K HP +  VD GE     R  Q +D D      LS L  VG      +   FT +
Sbjct: 514 SQSPQKQHPLLDGVD-GECPFPSRRSQHTD-DSALCMSLSGLNQVGCAATLPHSSAFTPL 571

Query: 564 KHSGR 578
           K   R
Sbjct: 572 KSDDR 576


>AK024961-1|BAB15044.1|  501|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21308 fis, clone COL02131. ).
          Length = 501

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 387 KSPAK---FHPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNITRKQY 542
           +SP K   F P  S VDP +  M+    ++ +YD+  ++ L  +TS+  +T+  Y
Sbjct: 217 ESPRKVVIFEPYPSVVDPNDPQMLAFNPRKKNYDR-VMKALDSITSIREMTQAPY 270


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,185,125
Number of Sequences: 237096
Number of extensions: 1570847
Number of successful extensions: 3186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3184
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)