Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c13
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-10|CAA94884.1|  165|Caenorhabditis elegans Hypothetical p...    50   1e-06
AB017628-1|BAA36497.1|  165|Caenorhabditis elegans acetyltransfe...    50   1e-06
Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    41   6e-04
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    41   6e-04
AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine re...    30   1.1  
U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm recept...    28   5.9  

>Z71178-10|CAA94884.1|  165|Caenorhabditis elegans Hypothetical
           protein B0024.12 protein.
          Length = 165

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/41 (51%), Positives = 31/41 (75%)
 Frame = +3

Query: 450 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHS 572
           VRPL + D+ KG++ LLSQLTSVGN+ ++ ++ RF  M+ S
Sbjct: 24  VRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTS 64


>AB017628-1|BAA36497.1|  165|Caenorhabditis elegans
           acetyltransferase protein.
          Length = 165

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/41 (51%), Positives = 31/41 (75%)
 Frame = +3

Query: 450 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHS 572
           VRPL + D+ KG++ LLSQLTSVGN+ ++ ++ RF  M+ S
Sbjct: 24  VRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTS 64


>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +3

Query: 465 RSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHS 572
           RSD D  +L+LL QLTSVG +T+  ++ RF+ MK+S
Sbjct: 204 RSD-DMNYLKLLEQLTSVGYVTKNDFEQRFSTMKNS 238



 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 450 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMK 566
           +R L+  D+  G+L+LL QLTSVG I +  +  +F  MK
Sbjct: 24  LRALRNDDF--GYLELLKQLTSVGFINQLVFRKQFDAMK 60


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +3

Query: 465 RSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHS 572
           RSD D  +L+LL QLTSVG +T+  ++ RF+ MK+S
Sbjct: 204 RSD-DMNYLKLLEQLTSVGYVTKNDFEQRFSTMKNS 238



 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 450 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMK 566
           +R L+  D+  G+L+LL QLTSVG I +  +  +F  MK
Sbjct: 24  LRALRNDDF--GYLELLKQLTSVGFINQLVFRKQFDAMK 60


>AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein71 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 378 PVFLISPEGKGIRRVSLPHFRSFPCPFCGFFL 283
           P+FL  PE    RR+ L    S PCP  GFFL
Sbjct: 169 PIFLNLPEQNRARRIVL---ESHPCPTKGFFL 197


>U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm receptor
           protein 185 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 276 LSIQTDISIL--YLPIPILFNYRIVAVRRGF 190
           L +QT I ++  Y+PI ILF + ++AV  GF
Sbjct: 258 LVVQTFIPLILMYIPIAILFTFPMIAVDIGF 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,788
Number of Sequences: 27780
Number of extensions: 265479
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)