Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c13
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.25 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   7.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.2  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 339 RVSLPHFRSFPCPFCG 292
           RVS P  R++ CP CG
Sbjct: 64  RVSCPVLRAYTCPICG 79


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 315 SFPCPFCGFFLIYLSIQTDISILYLPIPILFNYR 214
           S   P    +L++  I   +SIL   I I +N+R
Sbjct: 290 SLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFR 323


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 402 FHPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNI 527
           + P+   V     W +  P+  SD   GFL +L  +  V  I
Sbjct: 40  YGPEAGNVSCSVSWEVHDPVTNSDTYIGFLFVLGLIVPVFTI 81


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 327 PHFRSFPCP 301
           PH+R+FP P
Sbjct: 44  PHWRAFPAP 52


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 327 PHFRSFPCP 301
           PH+R+FP P
Sbjct: 44  PHWRAFPAP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,844
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)