Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c12
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 60 1e-09
03_01_0548 + 4099386-4099847,4100435-4101316 57 9e-09
03_01_0547 + 4093196-4093657,4094267-4095148 57 9e-09
03_01_0544 + 4082528-4082989,4083585-4084466 57 9e-09
03_01_0543 + 4076981-4077442,4078145-4079026 57 9e-09
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 51 8e-07
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 51 8e-07
04_03_0106 + 11325172-11325379,11326590-11326640,11326987-113270... 36 0.032
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 35 0.056
02_04_0462 + 23131433-23132836 34 0.097
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 33 0.13
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255... 32 0.39
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 31 0.91
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 29 2.1
08_02_0321 - 15761468-15761512,15761573-15761673,15761854-157619... 29 2.1
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 2.1
02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670 29 2.1
10_07_0138 + 13325418-13325954 29 3.7
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 29 3.7
08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575 28 6.4
04_01_0103 + 1082077-1082167,1083037-1085477 28 6.4
02_04_0017 + 18937774-18937864,18938505-18940945 28 6.4
01_06_0662 + 30987187-30987277,30987825-30990214 27 8.5
01_01_0084 - 636835-637965 27 8.5
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +3
Query: 480 DAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
DAGKST GGQI+ L+G VD RT++KYE+EA++KSRES
Sbjct: 4 DAGKSTAGGQILFLSGQVDDRTIQKYEKEAKDKSRES 40
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +3
Query: 441 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
+K H+N+V IGHVD+GKST G ++ G +D R +E++E+EA E ++ S
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +3
Query: 441 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
+K H+N+V IGHVD+GKST G ++ G +D R +E++E+EA E ++ S
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +3
Query: 441 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
+K H+N+V IGHVD+GKST G ++ G +D R +E++E+EA E ++ S
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +3
Query: 441 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
+K H+N+V IGHVD+GKST G ++ G +D R +E++E+EA E ++ S
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 50.8 bits (116), Expect = 8e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +3
Query: 453 VNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
+N+ +GHVD+GKST+ G+++ L G + + + K E+EA+EK + S
Sbjct: 248 LNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGS 293
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 50.8 bits (116), Expect = 8e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +3
Query: 453 VNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
+N+ +GHVD+GKST+ G+++ L G + + + K E+EA+EK + S
Sbjct: 248 LNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGS 293
>04_03_0106 +
11325172-11325379,11326590-11326640,11326987-11327073,
11327276-11327373
Length = 147
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 423 VEDTRSKKEHVNVVFIGHVDAG 488
VE+ + K H+NVVFIGHVD G
Sbjct: 97 VEEEKETKRHLNVVFIGHVDPG 118
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 456 NVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRE 587
N I H+D GKST+ +++ LTG V R +++ + + RE
Sbjct: 79 NFSIIAHIDHGKSTLADKLLELTGTVQKREMKQQFLDNMDLERE 122
>02_04_0462 + 23131433-23132836
Length = 467
Score = 33.9 bits (74), Expect = 0.097
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 444 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYE 560
K HVN+ IGHVD GK+T+ + + V +KY+
Sbjct: 68 KPHVNIGTIGHVDHGKTTLTAALTMVLASVGGSAPKKYD 106
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 444 KEHVNVVFIGHVDAGKSTIGG---QIMSLTGMVDXRTLEKYEREAREKSR 584
K HVNV IGHVD GK+T+ ++++ G ++ ++ EK+R
Sbjct: 65 KPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAVAFDEIDKAPEEKAR 114
>09_01_0178 -
2548611-2548670,2549816-2549918,2549993-2550096,
2550893-2550988,2551418-2551482,2551558-2551591,
2552469-2552540,2552567-2552644,2553416-2553477,
2554267-2554530,2555057-2555246,2555432-2555500,
2555613-2555669,2555746-2555846,2556029-2556146,
2556225-2556272,2556362-2556487,2556960-2557118,
2558119-2558216,2558324-2558416,2559741-2559937,
2560231-2560354,2561121-2561334,2561773-2561830,
2561955-2562433
Length = 1022
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 207 PRVEEPPPTTASVPPDVSPTADSWEVE 287
PRVE PPP+ A+ PP + P D + E
Sbjct: 62 PRVEGPPPSPATAPPMLHPREDDEDEE 88
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 456 NVVFIGHVDAGKSTIGGQIMSLTGMV 533
N I HVD GKST+ +++ LTG +
Sbjct: 59 NFSIIAHVDHGKSTLADRLLELTGTI 84
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 384 ELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYER 563
+L+K K P + S++ +N+ IGHV GKST+ + +++G+ R + ER
Sbjct: 38 DLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTV---VKAISGVQTVRFKNELER 94
>08_02_0321 -
15761468-15761512,15761573-15761673,15761854-15761950,
15762671-15762742,15762838-15762960,15763047-15763129,
15763269-15763410,15763496-15763654
Length = 273
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 475 CPINTTFTCSFLLRVSSTRGGFFFGIFFVNSPSSLGFV 362
C T+ TC+F L TR G FF ++F + S L FV
Sbjct: 27 CASATSNTCAFSLAEHLTREGMFFDLYF-RTQSYLRFV 63
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 207 PRVEEPPPTTASVPPDVSPTADSWE 281
P +PPP PPD P D+W+
Sbjct: 213 PVTPQPPPPPPPPPPDSKPGVDTWD 237
>02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670
Length = 197
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 213 VEEPPPTTASVPPDVSPTADSWEVEAD 293
++EPPP A P S TA W ++AD
Sbjct: 5 IDEPPPAPAPPQPKQSTTARRWWMKAD 31
>10_07_0138 + 13325418-13325954
Length = 178
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 251 GRDRCSSRWWFFNTWRSRC 195
G RCS RW WRSRC
Sbjct: 83 GARRCSRRWRRSRRWRSRC 101
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 441 KKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 533
KK+++ N+ I HVD GKST+ +++ G++
Sbjct: 15 KKDNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46
>08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575
Length = 358
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 481 STCPI-NTTFTCSFLLRVSSTRGGFFFGIFFVNSP 380
S CP+ N TC+ LL V T GF G F +++P
Sbjct: 159 SPCPLANIVGTCNGLLCVVGTGAGFTTGGFVLSNP 193
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 441 KKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 533
KK ++ N+ I HVD GKST+ +++ G++
Sbjct: 15 KKNNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 441 KKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 533
KK ++ N+ I HVD GKST+ +++ G++
Sbjct: 15 KKNNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 441 KKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 533
KK ++ N+ + HVD GKST+ +++ G++
Sbjct: 15 KKHNIRNMSVVAHVDHGKSTLTDSLVAAAGII 46
>01_01_0084 - 636835-637965
Length = 376
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 207 PRVEEPPPTTASVPPDVSPTADSWEVE-ADDALLT 308
P PPPT++++P + P+ W + AD AL T
Sbjct: 28 PGAAPPPPTSSALPTQIPPS--DWSLSPADPALAT 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,513,493
Number of Sequences: 37544
Number of extensions: 206331
Number of successful extensions: 986
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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