Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c12
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    59   3e-11
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    59   3e-11
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    28   0.079
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.079
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 25/50 (50%), Positives = 37/50 (74%)
 Frame = +3

Query: 441 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
           +K H+N+V IGHVD+GKST  G ++   G +D RT+EK+E+EA+E  + S
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 53


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 25/50 (50%), Positives = 37/50 (74%)
 Frame = +3

Query: 441 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYEREAREKSRES 590
           +K H+N+V IGHVD+GKST  G ++   G +D RT+EK+E+EA+E  + S
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 53


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 0.079
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 384 ELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDXRTLEKYER 563
           +L+K    K      +  S++  +N+  IGHV  GKSTI   + +++G+   R   + ER
Sbjct: 20  DLSKLDVSKLTALSREVISRQATINIGTIGHVAHGKSTI---VKAISGVQTVRFKNELER 76


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 0.079
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 411 KPPRVEDTRSKKEHVNVVFIGHVDAGKSTI 500
           K P   +++  K H  V  +GHVD GK+T+
Sbjct: 132 KRPLPNESQLIKRHPIVTIMGHVDHGKTTL 161


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 298 HYSHLKKTMNRKKKNWIHK*ETQI 369
           HY   K+  + +  NW HK ET I
Sbjct: 175 HYDRYKEEESNENYNWEHK-ETHI 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,381
Number of Sequences: 438
Number of extensions: 2415
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)