Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c10
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.70
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.70
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 0.93
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 28 0.93
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 28 1.2
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 27 2.8
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 26 3.7
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 6.5
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 25 6.5
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 25 6.5
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 6.5
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 6.5
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 25 8.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.7
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.7
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 28.7 bits (61), Expect = 0.70
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 26 KEHR-RTTMKIKPDSPVSMIDPSLLLRPEAKYDDKPVEAFRDYNIDENDPIKMRVRKTYY 202
K+HR R + P P + PS +RP + D P N + D ++ T
Sbjct: 388 KQHRPRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSN-TQTDSYFIQRENTPT 446
Query: 203 DMHTNMTVDFVKSKMEKWLKFNHFKATVK 289
+ ++ T+ KS M+ +L+F+ + VK
Sbjct: 447 NHNSIPTIQLEKSSMD-FLRFDPPPSAVK 474
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +2
Query: 20 SEKEHRRTTMKIKPDSPVSMIDPSLLLRPEAKYDDKPVEAFRDYNIDENDPIK 178
+E ++R + K+ P + +D L P +Y P + DY +P++
Sbjct: 141 NELDYRPDSQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 0.93
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 97 TASGGQV*RQARGSLPGLQHRRER--PHKDESSENIL 201
T S GQ+ + +L GLQH E H+D S+NIL
Sbjct: 476 TLSEGQIAAICKETLEGLQHLHENGIVHRDIKSDNIL 512
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 28.3 bits (60), Expect = 0.93
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 274 EVIELQPLFHFTFDKVNSHIRVHVVICFPNSH 179
E ++L L F+ + + H V+CFPN H
Sbjct: 55 ENVDLNNLSDEQFEDIRKALFEHQVVCFPNQH 86
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 281 TVKDALIKLNDLVDESDPDTDL-PNIVHAFQTAERIREEHPDEDW 412
T+ L+ + L+ + +PD L P I H ++T +R R E +W
Sbjct: 98 TISKVLLSICSLLTDPNPDDPLVPEIAHVYKT-DRSRYELSAREW 141
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 401 DEDWFQLIGLMHDLGKVMAFYDEPQWCVVGDTFPVGCK 514
D D F+ L +GK +++Y C+V FP+G K
Sbjct: 522 DLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNK 559
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 161 ENDPIKMR---VRKTYYDMHTNMTVDFVKSKMEKWLKFNHFKATVKDALIKLNDLVDESD 331
EN IK R + + +Y++H +DFV + + + K + + ++ D +DE
Sbjct: 92 ENIDIKKREETLSQVFYNLHMLFGIDFVSTLVVSFPHITFLKESGNSSSNEIYDSIDEIP 151
Query: 332 P 334
P
Sbjct: 152 P 152
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 266 NHFKATVKDALIKLNDLVDESDPDTDLPNI 355
N +KA VK + D+ +E + D D+P I
Sbjct: 455 NLYKAPVKAIAVADTDMDEEDEVDEDIPQI 484
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 179 MRVRKTYYDMHTNMTVDFVKSKMEKWLKFNHFKATVKDALIKLN-DLVDESDP 334
MRV Y + + V+ +S W K + +KDA++ + +L+ E DP
Sbjct: 462 MRVTNDYKEWNAANQVNDPESPYTFWSKALELRKELKDAVVYGSFELISEEDP 514
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 371 TAERIREEHPDEDWFQLIGLMHDLGKVMAFYDE 469
T R +HPDE+ +Q I L D K+M+F +E
Sbjct: 84 TVNSCRRQHPDENGWQFI-LWTD-EKIMSFMNE 114
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 147 SRKASTGLSSYLASGRSSRDGSIMETG-ESGLIFI 46
S A T S+Y+AS + S DGS + G +GL+ I
Sbjct: 213 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 247
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 532 HNRLAPLTTNRKGITHHAPLWFIVE 458
H R+A LT +R+ HAP F E
Sbjct: 495 HKRMASLTNSREMQIQHAPTTFAAE 519
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 450 LWHSTMNHSGAWWVIPFRLVVSGASLLCTETTASNVT 560
LWHST + + ++P R++ +S+L T + + N T
Sbjct: 411 LWHSTHDAEASLRILPRRMIAE-SSILETWSRSGNQT 446
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 215 NMTVDFVKSKMEKWLKFNHFKATVKDALIKLNDLVDESDPDTDLPNIVHAFQTAERIREE 394
NM + +VKSK + W HF I+ VD++ +L + + AE+ R+
Sbjct: 760 NMILRYVKSKADWWTSVAHFNR----ERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQH 815
Query: 395 H 397
+
Sbjct: 816 N 816
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 251 KWL-KFNHFKATVKDALIKLNDLVDESDPDTDLPNIVHAFQTAERIREEHPDEDWFQ 418
+W K NH AT +D L+ + D ++A +TA E H DE WF+
Sbjct: 86 RWYSKENHISATTEDLYNSLHGTYNNYKQD------LYA-RTARSFVESHCDEAWFE 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,135
Number of Sequences: 5004
Number of extensions: 62082
Number of successful extensions: 209
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -