Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c10
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 142 3e-34
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686... 34 0.10
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 29 2.2
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 29 2.9
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 29 2.9
09_06_0344 - 22419152-22419250,22419460-22419554,22419952-224201... 29 3.8
07_03_0598 + 19858004-19858192,19858295-19858926,19859001-198590... 29 3.8
07_03_0448 - 18306583-18306654,18307132-18307222,18307679-183077... 29 3.8
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853 29 3.8
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 29 3.8
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402... 28 5.0
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 28 5.0
06_01_0793 - 5918912-5919793,5919830-5920285 28 5.0
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 28 5.0
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 28 5.0
06_03_0198 - 17797574-17797717,17797995-17798099,17798509-177986... 28 6.7
04_04_1516 - 34122205-34122348,34122430-34122534,34122878-341230... 28 6.7
02_01_0154 + 1078561-1078630,1078758-1078885,1079016-1079120,107... 28 6.7
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 27 8.8
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 142 bits (343), Expect = 3e-34
Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Frame = +2
Query: 137 AFRDYNIDENDPIKMRVRKTYYDMHTNMTVDFVKSKMEKWLKFNHFKATVKDALIKLNDL 316
AFR+Y + K V + Y H N T DFV+ E++ + + + + + + LN+
Sbjct: 47 AFRNYEAESER--KETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEF 104
Query: 317 VDESDPDTDLPNIVHAFQTAERIREEHPDEDWFQLIGLMHDLGKVM---AFYDEPQWCVV 487
+D+SDPD D+P I H QTAE IR++ PDEDW L GL+HDLGKV+ +F + PQW VV
Sbjct: 105 IDDSDPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVV 164
Query: 488 GDTFPVGCKWGKSIVYGDDSFQRNPDTYNPKYNTEHGMY 604
GDTFPVGC + + V+ F+ NPD NPK NT+ G Y
Sbjct: 165 GDTFPVGCAFDECNVH-FKYFKENPDYLNPKLNTKFGAY 202
>04_03_0461 -
16165126-16165419,16165947-16166195,16168510-16168645,
16171251-16171469,16172738-16173116,16173660-16173918,
16176052-16176315
Length = 599
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 5 ISLNRSEKEHRR-----TTMKIKPDSPVSMIDPSLLLRPEAKYDDKPVEAFRDYNIDEND 169
+S R HR +T I P VS +PS+ YD KP++ D+ +++ D
Sbjct: 40 VSFRRQSNAHRHAAQVVSTQSITPAKEVSSFEPSVWGDFFINYDTKPLQRSEDWMMEKAD 99
Query: 170 PIKMRVR 190
+K VR
Sbjct: 100 KLKQDVR 106
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +2
Query: 65 SPVSMIDPSLLLRPEAKYDDKPVEAFRDYNID-ENDPIKMRVRKTYYDMHTNMTVDFVKS 241
+PV ++D R A D +E +NID EN + M K+ +H+ D K
Sbjct: 125 APVKLMDVVFTGRKVAHRKDDLIEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKF 184
Query: 242 KMEKWLKFNHFKATVKDALIKLNDLVDESD 331
+ L H V D L+ + +L+D +D
Sbjct: 185 FFKATL-LQH----VNDLLLAIRELLDNAD 209
>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = +1
Query: 34 QTHYNENQARFPGLHDRPIPATASGGQV*RQARGSLPGLQHRRERPHKDESSENILRHAH 213
+TH+ + ++ + G + + P R +RGS L+ RE P+ ++ R H
Sbjct: 967 RTHFQQRKS-YSGDYSQVAPPNQYWHNGNRPSRGSYGYLEVFREHPNHHSGQDSRTRSYH 1025
Query: 214 EYDC*LCQK*NGKVVEVQSLQ 276
E C Q NG+ S+Q
Sbjct: 1026 ETMCSTPQTGNGRFPYSGSIQ 1046
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 450 LWHSTMNHSGAWWVIPFRLVVSG 518
LW N SG W+I F+ VSG
Sbjct: 116 LWEDPANRSGGKWIIRFKKTVSG 138
>09_06_0344 -
22419152-22419250,22419460-22419554,22419952-22420108,
22420825-22420869,22421080-22421211,22421496-22421594,
22421690-22421785,22421968-22422149,22422242-22422494,
22422867-22422974,22423037-22423094,22423462-22423613,
22423698-22423792,22424172-22424287,22424369-22424495,
22424565-22424661,22424745-22424913,22425879-22426027
Length = 742
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 609 GLYMPCSVLYLGLYVSGLRWKLSSPYT--IDLPHLQPTGKVSPT 484
G Y + YL L V G R+ L +T D HLQP KV+PT
Sbjct: 12 GAYGEGPLCYL-LAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPT 54
>07_03_0598 +
19858004-19858192,19858295-19858926,19859001-19859057,
19859159-19859397,19859903-19860097,19860140-19860226,
19861086-19861201
Length = 504
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 419 LIGLMHDLG-KVMAFYDEPQWCVVGDTFPVGCKWGKSIVYGDDSFQRNPDTYNPKYNTEH 595
L+G D G KV+ D PQ+ F V GK IV D +P+TY +N +H
Sbjct: 402 LLGFKFDYGIKVLLILDIPQFDTHSVDFSVVESTGKGIVGRHDWRDAHPNTY---FNMDH 458
>07_03_0448 -
18306583-18306654,18307132-18307222,18307679-18307752,
18308440-18308557,18308785-18308888,18309463-18309572,
18309995-18310115
Length = 229
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 164 SRRCCSPGRLPRACRH-TWPPDAVAGMGRS 78
S R C PGRLP AC H P A G++
Sbjct: 116 SMRGCIPGRLPLACEHLAVRPSGQAATGKT 145
>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
Length = 383
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 546 LSSPYTIDLPHLQPTGKVS 490
L PY ID PH +PTG+ S
Sbjct: 62 LQLPYGIDFPHSRPTGRFS 80
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 446 KVMAFYDEPQW-CVVGDTFPVGCKWGKSIVYGDDSFQRNPDTYNPKYN 586
KV+ F +P C+ P+ + + + D +F+++P TY P+ N
Sbjct: 540 KVVVFEGKPSVDCIANAPEPLASGMNRFLSHLDVTFRKDPTTYRPRIN 587
>12_01_0988 -
10039187-10039243,10039356-10039649,10039838-10040202,
10042916-10042931
Length = 243
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 242 KMEKWLKFNHFKAT-VKDALIK--LNDLVDESDPDTDLPNIVHAFQTAERIREEHPDEDW 412
K+ W K N VKDA+ + ++D +D T L NI +F+ A E+W
Sbjct: 72 KLANWEKSNRMCLIYVKDAISPEVIGGIIDSNDIKTYLANIEESFEFAPEAHANTLKEEW 131
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 281 TVKDALIKLNDLVDESDPDTDL-PNIVHAFQTAERIREEHPDEDWFQ 418
T+ L+ ++ L+ + +PD L P I H ++ ++R R E W Q
Sbjct: 98 TISKVLLSISSLLTDPNPDDPLVPEIAHVYK-SQRPRYEETARAWTQ 143
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 585 LYLGLYVSGLR--WKLSSPYTIDLPHLQPTGKVSPTTHH 475
L LGL ++G R W L P+ +DL + P G T H
Sbjct: 264 LALGLELAGTRFLWALRKPHGVDLSDVLPPGYQERTKSH 302
>02_05_1074 - 33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 413 FQLIGLMHDLGKVMAFYD-EPQWCVVGDTFPVGCKWGKSIVYGDDSFQRNPDTYN 574
+Q + +HD G ++ D + + V G +P + G SI+ DDS R P N
Sbjct: 899 YQALEDVHDAGDILLKGDGKKELTVHGGRYPAMVQSGSSIMIEDDSRLRGPKMSN 953
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 281 TVKDALIKLNDLVDESDPDTDL-PNIVHAFQTAERIREEHPDEDWFQLIGLMH 436
T+ L+ + L+ + +PD L P I H ++T +R + E+ W Q M+
Sbjct: 322 TISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRHKYENTARTWTQSSSYMY 373
>06_03_0198 -
17797574-17797717,17797995-17798099,17798509-17798636,
17799444-17799513
Length = 148
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 281 TVKDALIKLNDLVDESDPDTDL-PNIVHAFQTAERIREEHPDEDWFQ 418
TV L+ + L+ + +PD L P I H ++T +R + E W Q
Sbjct: 98 TVSKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYESTARGWTQ 143
>04_04_1516 -
34122205-34122348,34122430-34122534,34122878-34123005,
34124003-34124072
Length = 148
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 281 TVKDALIKLNDLVDESDPDTDL-PNIVHAFQTAERIREEHPDEDWFQ 418
T+ L+ + L+ + +PD L P I H ++T +R + E W Q
Sbjct: 98 TISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYESTARSWTQ 143
>02_01_0154 +
1078561-1078630,1078758-1078885,1079016-1079120,
1079228-1079371
Length = 148
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 281 TVKDALIKLNDLVDESDPDTDL-PNIVHAFQTAERIREEHPDEDWFQ 418
T+ L+ + L+ + +PD L P I H +T +R+R E W Q
Sbjct: 98 TISKVLLSICSLLTDPNPDDPLVPEIAHMCKT-DRLRYESTARGWTQ 143
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 119 DDKPVEAFRDYNIDENDPIKMRVRKTYYDMHTNMTVDFVK 238
DD + RD N D +DP +M + K YDM MT K
Sbjct: 477 DDDVAQNGRDRN-DGDDPRQMMMLKEIYDMVIGMTKTMTK 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,261
Number of Sequences: 37544
Number of extensions: 435947
Number of successful extensions: 1231
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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