Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c07
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 29 0.40
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 28 1.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.2
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 6.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 8.7
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 8.7
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.7
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc... 25 8.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.7
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 25 8.7
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 29.5 bits (63), Expect = 0.40
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +2
Query: 353 NYPVLVPNLK---GYETAKQCNVEEIAIFPAGSEGFSQKNLNC-----SVEEGLRRFKQV 508
++P+ V L+ Y N E ++ P +GF+ LNC S+ ++++
Sbjct: 532 HFPLFVTMLRIKDPYRIPSGLNFEIVSFEPLKQDGFATLYLNCNSKPMSLGSMFEHYRKL 591
Query: 509 ADEAVRDGLRVRGYISCVVGCP 574
A + L IS +VGCP
Sbjct: 592 ARRLISHYLSKTTLISLLVGCP 613
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/51 (23%), Positives = 30/51 (58%)
Frame = +2
Query: 224 LISKIVAAGIKNVESASFVSPKWVKQMSDSVDVMKNIQRVPGVNYPVLVPN 376
++++++ ++ S+++V + K S +VD +K + G+NY + +PN
Sbjct: 96 ILTRLLPYLYESTNSSNWVRTYFQKDFSQTVDDLKPLLSELGLNYEIELPN 146
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +2
Query: 227 ISKIVAAGIKNVESASFVSPK---WVKQMSDSVDVMKNIQRVPGV 352
+S I +G N+E SF+S + ++ +DS+ V+KNIQ+VPGV
Sbjct: 726 LSYIENSGFTNLEK-SFLSEESHCGLESKTDSL-VIKNIQKVPGV 768
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 418 FFYVALFSCFISFQIWNKYRVIHSRHSLNIFHNIN 314
FF +ALF F F I+ +R +H R H ++
Sbjct: 152 FFSIALFLLFSDFLIYWIHRALHHRWLYAPLHKLH 186
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 409 VALFSCFISFQIWNKY 362
VALFS ++F++WN Y
Sbjct: 541 VALFSYPVAFELWNLY 556
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.0 bits (52), Expect = 8.7
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 38 LRNTQLIMNNVTKTCVLNILRSNNFLQR-SLSTVAPEIRIYEVGPRDGLQNESKFVPTDI 214
L++ L+M N++ +LR N L+R S VA + Y+ +++ + F +I
Sbjct: 409 LKDADLVMENLSTRNTEKVLREVNILKRLRESCVAITAKSYDTLDERKIRSLTTFEYLEI 468
Query: 215 KVELISKIVAAGIKNVESAS 274
K KI G +N + S
Sbjct: 469 K--NFQKIYFTGSENCQKLS 486
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 232 TNEFNFNVCWNKLRFILKAISRSYFINSDFRGYCTKTTLQEVI 104
TN+ N +CW L F + + I ++ GY K TL ++
Sbjct: 752 TND-NLVLCWRDLNFTVVTKTSKKQILTNVSGYLKKNTLTALL 793
>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 83 VLNILRSNNFLQRSLSTVAPEIRIYEVG 166
++ +LRS + + S V P++ IY +G
Sbjct: 55 IVPVLRSGMSMMSAFSKVLPDVPIYHIG 82
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 281 SPKWVKQMSDSVDVMKNIQRVPGVNYPVLVPNL 379
S ++ KQ S S D NIQ +P N ++VP L
Sbjct: 70 STEFSKQESASNDDDTNIQLIPENNMKIVVPAL 102
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +2
Query: 182 QNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVK 298
Q ES+ P D K AG++ SPKW +
Sbjct: 67 QPESQMSPKDKYTMFTRKTQGAGLQGFRKGVHKSPKWTR 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,550
Number of Sequences: 5004
Number of extensions: 50644
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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